RNA id: TU86070


Basic Information

Item Value
RNA id TU86070
length 2501
lncRNA type sense_over
GC content 0.48
exon number 2
gene id AMCG00014278
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7413729 ~ 7423291 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagatcgGATTCGTGCTGTACCCCCCAGGAGGGCTGGCCAAGTGGGACCTGATGGATCACAACAACATGATGTTCATCACCATGTGTTACTGCTGGCACCTGGCCCTCGCCCTGCTCACCGTGGCCCTGGTCTATTGCACTGTGTGCTGGGTGGCACGGACGCGGCTGCGGAGGACACCCTCGGTGGAGATGGGCCTCCTGAAGACAGACAGGGACCTGGAGTCTGAGGATGAGATGTAGCCGCCCCCTGCCCATCCTCTCCCACTCGCCTCACCGCCACCGGACCAGAGGGAGACTGGGAGAGGCGGGGGTAGGACCAGGTCTTCCCTGTCAGTGTTCCCAGGGGGCAGGACACAGAAGCACATCTTTCCTGGGGGTGGAGAACCTCCTGACCACACCCAGACCACCACCTGGTGCCTGACCGTGGTCCCACTGTGCCCAAATGAGTCTGATTTGTTGTATAGTATCTAATCCTCTCCTTGTTGGAGAACGACAATGTGAGACAATTATTGTGTCCAGTTGCCATCTAGTGGGGAATAGCGGAATTGCAGATGAATGTGCCTTCAAAAAGTCGCCATGAAAACCAGTGCCTATACTAGGAAGTGTTCGCATCCCTTGGACTTCTCACATTGGTCACATTGTTGTTTTACAACCtgaaaatgtgatgcatttaaatgtgaaatgggCCAAGAGGACTGAATACTTTCTATAGGAACTGTATTATACAGTTCTCATTAGTAAactatttgaaaaataattaaaaaagctaaATCAAGAAAGAGACCCATTTTATAAAGGGAAAACAATCAATTTCAGTGTATGTTCACAAGCGCTGGAGCTCCCGTCTTCAGTCGAGTGATTGTTTGATTGTGTGTCAGTTGTCCTGCGCTGCTCAGCACTATTCCAGACGGCTTGCGTCCCGTGCGATGGAGCTGTGTACTTCTGGTGTCAGTCCTGCTCTTAGACAGGGCTCAGTGCAGTGGGCAGGGTGAGATACGGGTCCCTGTGTGTCTCCGTTTGCACAGGGGCACCGCTTTTTGATCCAGTGCAATTTCAGCTGTTTTCTCTCCAAGTAAAGCCCGGCCCCAGCTCCCAAACCAGGATTGATTTATTCTGCATCTGTATTCTCTCTGGCTCAATTTGTGCCTTCAATCGTCTCCGGCCACTAGTCAGGGAATCGGCAGCGCTTTTCACTCTGGAGACTAACCTTTTGCTGTGGATCCCCCCTGTATGTATAGTCAGTAAAGGTAGAGTAGCTGTCCCTACTCTTATTAAAGCCTCTCCCGCTGCACAGCCGCCCTCCCGCTCTGACAGACCACACACAGAAGCACAAGATAGAGGCTCCCTGTCGGTCTACAGGACGTGCACtgtaatgaacaaaacaaacaaacaaacagaaagcgTCTGTACTGCAGAGTGGATCTGAAGCACAGATGACATTGCACTGCACAGCGATGTGTGCTCGGGGGGGTAACATCACTGCGGCATTATTCTCACCTCATATGTGTCTCAACCAAAAAATAACCAAACTACAGCCTCACACAACACTGCCAGAATGAAGTGCGTCAGCTGGGACACGGTTCTGCACTGCAGTGTGGAAGTGATCTGTCCTGGACCTGAACGGCTACGGCGTCTCCTGCCTTCACTCTCAAAGGCCCAGTTGAAGCGGCCGCCAGTCGAAACGCTTGATCCGAATGATCAAGGCTCTGTGGACATGGGCAGATCCAGCGTTCTCTAGCGtttctttttaaaggaatccGTTACTTTGAATTATTctgtacagaaagaaaaatcGAAGCTTGAAAATGGTGACAACGAAAGggaagattttttaaataagaaaatatatatatttttctctttgttttttcttttctgaactgtatatttaatgtttatagcTAAGGATCAAGAAGTAGagatttatttaacagaaaacatatCTTGTTATCTCTGCCAGTTATAATCGGTGGAATTCTACTTTTATAATGTTGAGTTGTGCACTGGCCAATAGACAGGGGTGAGTTTGAACagaagagagacacaaacatgtCAAACACAATCCAGGTACAGCCCCAGTCTGGCGATAAAGTGGTACTGCAAACTGTGTGTCTTGActttgtctctgtgtgaagCGAAATGTGTGTTTCAGTCCCAGGTGTCTCGCAGCCAGACTGTCCTCCGAGACGCGGAGTAGGAAATGATCCAAAGGGAAGTAAATTAACTTATTtcaggtattattattattattattattattattattattattgaattggGGTACAAAGGGAATCCTGTGAAGTAAACCAGTAGTAAGTCCCTACTAAGTCTCTTCCCGCTCCATCACCCGCGCGGCGCCAGCCTGGCCTCCATCTCTCTGCTCCGTGCTTTCCGTGTTTATTCCCTCTGCACGGGGGTTGAGACCGAGGTTCTGTTCACAGTGTGCAATTGTGTGGAAACTTGAATCAAactacagtgtttttgttttgttttactgagcT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86069 lncRNA downstream 1839 7402152 ~ 7411890 (-) True AMCG00014276
TU86013 lncRNA downstream 73174 7340351 ~ 7340555 (-) True G68829
TU86011 lncRNA downstream 124292 7288936 ~ 7289437 (-) True G68827
TU86010 lncRNA downstream 125394 7288063 ~ 7288335 (-) True G68826
TU85950 lncRNA downstream 355410 7054777 ~ 7058319 (-) True G68774
TU86077 lncRNA upstream 23985 7440500 ~ 7441172 (-) True G68867
TU86086 lncRNA upstream 39463 7455978 ~ 7459889 (-) True G68874
TU86087 lncRNA upstream 48894 7465409 ~ 7465662 (-) True G68875
TU86117 lncRNA upstream 209470 7625985 ~ 7626375 (-) True G68905
TU86202 lncRNA upstream 457638 7874153 ~ 7874358 (-) True G68981
AMCG00014276 mRNA downstream 2191 7402152 ~ 7411538 (-) False AMCG00014276
AMCG00014277 mRNA downstream 15960 7387618 ~ 7397769 (-) True AMCG00014277
AMCG00014271 mRNA downstream 26745 7379689 ~ 7386984 (-) False AMCG00014271
AMCG00014270 mRNA downstream 36806 7367394 ~ 7376923 (-) True AMCG00014270
AMCG00014269 mRNA downstream 47989 7347452 ~ 7365740 (-) True AMCG00014269
AMCG00014279 mRNA upstream 8613 7425128 ~ 7425676 (-) True AMCG00014279
AMCG00014275 mRNA upstream 9706 7426221 ~ 7436106 (-) True AMCG00014275
AMCG00014280 mRNA upstream 152796 7569311 ~ 7580100 (-) True AMCG00014280
AMCG00014284 mRNA upstream 252038 7668553 ~ 7675258 (-) True AMCG00014284
AMCG00014287 mRNA upstream 314499 7731014 ~ 7751865 (-) True AMCG00014287
TU86038 other downstream 32949 7378088 ~ 7380780 (-) True AMCG00014271
TU85055 other downstream 4584585 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 4769822 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 4871032 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 5495547 1916727 ~ 1918182 (-) True G67843
TU86071 other upstream 1083 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 720816 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 739714 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 966770 8383285 ~ 8384224 (-) True G69156
TU86630 other upstream 1893936 9310451 ~ 9317167 (-) True AMCG00014328

Expression Profile