RNA id: TU86071


Basic Information

Item Value
RNA id TU86071
length 966
RNA type TUCP
GC content 0.63
exon number 4
gene id AMCG00014278
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7413729 ~ 7423291 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAACACCGCCGGGTGGGCCCGGTCCCCCGCCGCCCTGGCCAATCCCGGCGCCGGTGGGAAGAGCCTGCTGCACAATCAAAGACCAAGTAGCCCTTCAAATACTGTCTTTAAGTCGTGTCTTTGCGCTTCTGGCAGACGGGTGGGATGTGGAGTAAGTGTTACCAatattgactttttatttatctCGTTTTCTGGCGGACCTCCACTGTGACGACCGACAGTCCAGACAGGGGTGTTTCAGCTGCCCGGGAGATGCCCTAGCTCGGTCAGAGGGGCTGCCCTGCTGCGCCGGTGACGTCACTTTTGCCACAACTCCAGACTGGGACTTTATTTTCCAGAGCAGAAGAAAGGAGTGACTGCCCCGCTgatcagacagagagaggGAGCTGAGACAAGAGGAGCCATGGGGAACTTCAAGGGCCACGCGCTGCCTGGGAGCTTCTTCCTGGTGGCGGGGCTGTGGTGGGCCGGCAAGGCCTCCTTCTGGCATGTGGCACGCAGGGGCAGGGGCACAGCGCCTCCTTTGGCCAGCCGGGTGGTGCAGCGCCGCCTCGAGATCCTGGAGGCCTCCGTCACTGTGGCTTTCTCTGTGATCGGGATGCTGGCAGAGCAGTTCGTGCCTGACGGGCCGTGGCTGCGGCTCTACAACACCGAGGAGCAGCACTGGGAGCGGCTCATGAACTGGCAGCACGCCACCATGTATCTGTTCTTCGCCCTGGCGGGAGGTGTGGCTCTGGCCGTCCACACCACTGGCTCCGCCCCCATCGCCCTGGACCGCCTGCTGCTCGCCATCGCCTTCTTCACCGAGGGGTTCCTGTTCCTGTACCACCTGCACGGTCGGGCGATGCTGGACGTCCATGTTCACCAGCTGCTGCTGTACGCGGTGTTCGGCACGGCGCTCACCGCCTTCCTGGAGATGTTCCTGCGCGGCAacctgctgctggagctgctgcggGCGGCGCTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86070 lncRNA downstream 1083 7413729 ~ 7416515 (-) True AMCG00014278
TU86069 lncRNA downstream 5708 7402152 ~ 7411890 (-) True AMCG00014276
TU86013 lncRNA downstream 77043 7340351 ~ 7340555 (-) True G68829
TU86011 lncRNA downstream 128161 7288936 ~ 7289437 (-) True G68827
TU86010 lncRNA downstream 129263 7288063 ~ 7288335 (-) True G68826
TU86077 lncRNA upstream 17209 7440500 ~ 7441172 (-) True G68867
TU86086 lncRNA upstream 32687 7455978 ~ 7459889 (-) True G68874
TU86087 lncRNA upstream 42118 7465409 ~ 7465662 (-) True G68875
TU86117 lncRNA upstream 202694 7625985 ~ 7626375 (-) True G68905
TU86202 lncRNA upstream 450862 7874153 ~ 7874358 (-) True G68981
AMCG00014276 mRNA downstream 6060 7402152 ~ 7411538 (-) False AMCG00014276
AMCG00014277 mRNA downstream 19829 7387618 ~ 7397769 (-) True AMCG00014277
AMCG00014271 mRNA downstream 30614 7379689 ~ 7386984 (-) False AMCG00014271
AMCG00014270 mRNA downstream 40675 7367394 ~ 7376923 (-) True AMCG00014270
AMCG00014269 mRNA downstream 51858 7347452 ~ 7365740 (-) True AMCG00014269
AMCG00014279 mRNA upstream 1837 7425128 ~ 7425676 (-) True AMCG00014279
AMCG00014275 mRNA upstream 2930 7426221 ~ 7436106 (-) True AMCG00014275
AMCG00014280 mRNA upstream 146020 7569311 ~ 7580100 (-) True AMCG00014280
AMCG00014284 mRNA upstream 245262 7668553 ~ 7675258 (-) True AMCG00014284
AMCG00014287 mRNA upstream 307723 7731014 ~ 7751865 (-) True AMCG00014287
TU86038 other downstream 36818 7378088 ~ 7380780 (-) True AMCG00014271
TU85055 other downstream 4588454 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 4773691 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 4874901 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 5499416 1916727 ~ 1918182 (-) True G67843
TU86293 other upstream 714040 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 732938 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 959994 8383285 ~ 8384224 (-) True G69156
TU86630 other upstream 1887160 9310451 ~ 9317167 (-) True AMCG00014328
TU86854 other upstream 3373425 10796716 ~ 10798147 (-) True G69537

Expression Profile