RNA id: AMCG00014282


Basic Information

Item Value
RNA id AMCG00014282
length 3668
RNA type mRNA
GC content 0.43
exon number 3
gene id AMCG00014282
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7645418 ~ 7653546 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTAACTGCATCCCTTGTGCCCGACCGCGGCGCTGGACCACTGCGCGCCTCCGCCTCATCACTCGCCTGTGCGGGATGGGAGCGCCGGTGCGCCTTTAGGAGACGAGCTCCCTCCTCCCCCGATGGCCATGCAAGCATGAGACTCCCCAGCTCcatctttgtgtctgtctcgCTGTTCACTGCCGAGACCACCGCCGCGCTGTACCTGAGCACCACGTACCGATCTGACGGGGACAAGATCTGGCAGGGGCTGACGCTGCTGTTCGCGCTGGTGCCTTCGGTGCTGGTCCAGCTCACCCTAACCTTTATACACAGGGACCTGAGCCGGGATAGACCCCTCGTCCTGCTGCTCCATATTCTGCAACTGGGACCGGTTGTCAGGTGTCTGGAAGCATTCTGCATATATGGAAAGGCAGGTCAGATCGAAGAGCCATATGTCAGCATTACGAGGAAAAAACAGATGCCCAAAGACGGTCAGTCCGAAGAGGTTGAGAAAGAAGTGGGGCAGGCAGAGGGGAAACTCTTCACCCACCGCGCTGCTTTCGCCCGGACGTCGGTGATCCAGGCCTTTCTGGGCTCTGCACCCCAACTCACACTTCAGCTTTATATCTGTGTGCTGCAGCAAGCGGTGTCCATAGGAAGAGGTACGTTGATGGTGATTTCCCTGCTGTCGATAGTGTACGGGGCTCTGCGCTGCAATATCCTCGCCATAAAGATTAAGTACGATGATTACGAGGTGGACGTGAAGCCCGCAGCATACCTGTGCATCTTCCTCTGGAGGAGCTTTGAGATCGCCACTCGAGTGGTCGTCCTCGTGCTCTTCAGCTCGGTGCTGCAGATATGGATTCTCCCGGTGGTGCTGCTCAActtcttcgtcttcttcttTTACCCCTGGATACTCTTCTGGCAGAGCAAGTCCCCGTTCCCGGAGAACATCGAGAAGACCCTCACTCGGGTGGGCACCACGATCGTCCTGTGCCTGCTGACCTTCCTATATGCCGGCATCAACATGTTCTGCTGGTCCGCGGTCCAGCTGAAGCTCAACGACCCCGACTTGATCAACAAGTCGCAGAACTGGTACCGGATGGCGGTGTATTACATGCTGCGGTTTGTTGAGAATGCCACGCTCATTTTGTTGTGGTACGTTTACCAGACCGAGTTCTACAAGTTCATATGTGCCCCCCTGCTCGTCTTGCAGCTCCTGATCGGTTACTCCATCGGCATCTTTTTCATGCTTGTGTTCTACCAGTTCTGCCACCCTTGTAAAAAGCTGTTCTCCTCCAGTATTTCCCAGGGACTCTGGGCGTGCTCAAACTTTCTCTGCATGATCTGTAAGCCCCCCAAACAAGGGGAGTCTGTTGACAAGACTACACTGGACCCACCCAGTTACACTGACAAAGACATTGCCAACGATACTATGAATGAGACTCTGAATGGGAAAACCAGCCAGAGTTTTTCCAGCAACCCTTCAATACTGAAGGACACACCAGAAGGCCCCTGTCTCAATGTGTGATGCACTCTGAAAGCCAAATGAAGGCACAGGTTCacagcaaaatgtaaaatgggaAAGCAACACCATAGCAGTCATGCACTTTTCCAGCAATTCTTATAAATATGGATTTCAGGGGAGACATTGGCCCATCAGCAATGCAAAGGAAAACCTATTCTAGATGTTGATTTCCCTTGTGTTACCAATACACAAAAGAGCAACTGTTTTCATTCCAAAAGAGTAATGTGCTAGAAATTCAGATAATTAAGAAGTCACCTGATTTCATACAGATTCCTCTTCCATCTCTTTGagctccaaaataaaatattcctaGTTATTTAACTCCAAGATATAATTAACTCTGTTGGCAGAAACCATACTGTAGGGGATGGGAATATTTCTGCTTGGTTCTGTAACTTTCGAATGTACATTTCAGTGCTCTTGCATTATGAAATATGAAGcgcaaaataatatgaattgagTGTTTACTGCCTGGGTAAGTTTTCTGGTTTCAAGTATTCAATTATTTGCATCCTAAGACAAATACTACTCAATGCAAGTTTTTCAATTTTATCTGCTACACTACAATTCAACAGCCCTGAAAACCAGTACAGCTAAATGTCTGTCTATGAGGCCAAGTTGAATATTTGGATAAGACTTCAATTACCGCAAAGagtcattttgtaatttgtttatctCTAAGAAGATTTTGCACAATTAACTAACAATTATAAATCCATATCGCATACCACTGGTATTCAAATACGGGACATTCAGTCATTTTTCCATCCACAGAccattaataaacatataagGCAAAGTTATAAacgaatacatattttttaacattattttaatgtgtgccTATGATTACAGCTGTTCTTTTTCAGGTTCTATGGCTGTGCCTTGTCAGTGattagtatttatttgcatatgcaAAAGAGAACCAttctcaaattcaaaacaataatCTTATAATGATAGAATACGAATTCATACATCTCATAGACTCTgttcaagtttttatttttatgctgcGACAAAATGGCTGCCCTGACCTGAAACTATTAACCATTCATAGTGTTTCTATGAACTATTGAGCAGACATTtctggagagaaaaaaggaacaaGTTCAAAATACACTTACtgctgtatatatgttttattattaaattacatataatgTGAAAGAAGTAAATGTGCACATTCTGCCAGCTCTTGTTTCTTTGCTCTCGATGCATCGTTGCACATGCCTGCACTTACTTCGTAACTAACCGAGTATAAAGACAGAACCACCAGAAGGGCACGCAATGTGTTCAGGGAATTAATTACCTGCATGAACTATTAGAGAGTCTTCGTCCATAGTTTCTACCACATGTCCTGTTTTGGGGTATTATATGATATTCTCTGTTGTGGCATCTATTTAGATTATTTTCTGTACAGAGGGAATACATTTGGGAAAGTATCTCAGCATTCATCAGGTATAATTCTTCAGTGGGTTTCTCACATTGGGATGCTATTTTTCTTGGCTTGTATGGCCAGTAGAAgaaacatatacaaaaataacagaacagaatacTTTATAACATACATCACCGTTCACAACAAGTGAAAGATGAAAGATGAATTTTGGCAGTGCTATGAGCCGCCCATTTACGCTGCAATCACGAATGTGCTTATTCTGACGGGATCATTTATTCTGCTGACCTCTAGTGGCCAAAGATAATGATACGGTTTACTGTACAAGGAAACACAAagtactgtacttgtgtaatgTCCATGTATACTTCACAGCCCACTGTATGCCACACCCTGGCCCTcgaacaatacaaaaaacaaaggtgTTTCATTACATCtgtgtttgaaataattaaaaaaaatacaataaggtATAAGGATTGCATTTCTCACAGAATTGATTTCAACATTGGATGTGAAGTAAAACAGGGAATTTGTGGTCAGACCACAGTGCTTGTACTGTGTTGTAAGGCTTGTACCTAAACCTGCTGTGTATTaactgtgtgtcagtctgtttgtactgtatttgaCTGTGTTATGTGTGATGTGTGGTGACTGGCTAACCTTTTCCAGTGTTTGGTATTTACCAGTGTACAATTTCATACAATATTGAAcagttaatttatatataaaaaaattatatatatatatatatata

Function

GO: NA

KEGG:

id description
K19522 XK; membrane transport protein XK

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86116 lncRNA upstream 19014 7625988 ~ 7626404 (+) True G68904
TU86061 lncRNA upstream 176108 7469078 ~ 7469310 (+) False AMCG00014272
TU85947 lncRNA upstream 587099 7056707 ~ 7058319 (+) True G68771
TU85912 lncRNA upstream 901307 6743863 ~ 6744111 (+) True G68738
TU85895 lncRNA upstream 930597 6713171 ~ 6714821 (+) True G68728
TU86203 lncRNA downstream 220981 7874527 ~ 7874742 (+) True G68982
TU86229 lncRNA downstream 361198 8014744 ~ 8015003 (+) True G69006
TU86247 lncRNA downstream 479742 8133288 ~ 8136210 (+) True G69023
TU86463 lncRNA downstream 1080777 8734323 ~ 8735939 (+) True G69206
TU86492 lncRNA downstream 1237040 8890586 ~ 8890834 (+) True G69232
AMCG00014281 mRNA upstream 2883 7637821 ~ 7642535 (+) True AMCG00014281
AMCG00014274 mRNA upstream 156067 7484062 ~ 7489351 (+) True AMCG00014274
AMCG00014272 mRNA upstream 162858 7464503 ~ 7482560 (+) True AMCG00014272
AMCG00014273 mRNA upstream 189462 7445016 ~ 7455956 (+) True AMCG00014273
AMCG00014266 mRNA upstream 360183 7278122 ~ 7285235 (+) True AMCG00014266
AMCG00014283 mRNA downstream 5922 7659468 ~ 7664529 (+) True AMCG00014283
AMCG00014285 mRNA downstream 59843 7713389 ~ 7729891 (+) True AMCG00014285
AMCG00014288 mRNA downstream 130183 7783729 ~ 7795382 (+) True AMCG00014288
AMCG00014289 mRNA downstream 192010 7845556 ~ 7855351 (+) True AMCG00014289
AMCG00014290 mRNA downstream 346544 8000090 ~ 8003278 (+) True AMCG00014290
TU86046 other upstream 228824 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 295951 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 2993454 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 2993454 4649200 ~ 4651964 (+) False G68475
TU84898 other upstream 4935089 2709024 ~ 2710329 (+) True AMCG00014146
TU86705 other downstream 2349512 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 6683312 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 8022085 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 8022085 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 8475979 16129525 ~ 16132802 (+) False AMCG00014508

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_05555926_05562924.mRNA True 1339 mRNA 0.53 3 CI01000306 5555926 ~ 5562949 (-)