RNA id: AMCG00014284


Basic Information

Item Value
RNA id AMCG00014284
length 3621
RNA type mRNA
GC content 0.40
exon number 6
gene id AMCG00014284
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7668553 ~ 7675258 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTGGCATGTAGACCTCTTACCGCTAGGGGGCGATCACCAGATCCGCTCCCCTTGCCGGCGGGGTGGGACTCCCTTGCCCGGCACTCGTCGAGCAGCAGCTCCGGACTGACAGCTGGACAGGAACCTGGCGCTGTGTCACCGACAGCGGCTTGCAGTGGGATCATCTCCGCCCGTGTGCGCGAAACAATGGAGGAGTACCATAACAGCGACGAGGTGTCCTTCAATCCAGATGAAGCAAGTAACTATGTCAAAGAGTGCATCGAAGGCATCATTGGTGGAGTGGATTACAACCAGAACAAAGTGAACCAGTGGACGGCCAGCATCGTGGAGCACTCCCTCACCCAGCTGGTCAAACAGGGGAAACCCTTCAAGTACATTGGCAAGTATCTCTTCATTATCGCTTCATTCTATCCACCCATCACTACGCATCTCAAAAACATCCTCGCATCACGAGGATGCATCACGGCTCCGTGCCCTGAATGGATTCTGAGATGGCGTGGCATGAACTGTGCGGTGATGCAGAAGAGCGGGGCCGGCCTGCACACGGCCAACTCCTGCTACTGGGACACCGCCACTGATGGGAGCTGCACGGTGAGATGGGAGAACCGCACCATGTATTGCGTGGTCAGCGTCTTCGCCGTGGCCGTGGCCCTCTAGCACGCTGACTCTGAACATGAAGAGCGTGAGAGAATAAGGCtggacaaacaaaaaatgcacacagacacgcatTGGGAACCACCAAAGCCTTGAAGATCTAATGCTGGTTATGTGTGTAACTCTCGCACTACGAATTAGCTTGGTAACAATGAACACTTGAGTACGCACACCTTCCACAGTCGCGCATCTAGGCTACACTGCAAGGTTTCCTTTGGCATTTTACACATTGTGGTTAACAGTCATGCTTAGATATGTTACCATTTCcattgttattgtgttgtgaaggcctttattttttttcattttacccTGAggcaaaacaatgcattttgtgATATGGATATTCTTTTATATAACGCTTGGCCTATTTTCTGGTTTCTCCAGTTTAAGCAGCAGTCCCATTGCTCAACAATGTGTATATATCTCTTTAATTCTTTTAGCAAATGCAGCAGAAAGGTGCTTGTTTAAGgccatgctttattttttataacatgGTGGTGCCCTACATGTCTTTAAATCTGGCCTCCATTCGTGCCTGGAAAGAACAAAATGGTTTCAGGGATTTTAACAACAACTGCTTTGTAAAAGAATGAAAGAGACCATCTGCTCTAAATTGTTCTTATTTGCTATCTTACCTCTAAACTGAAGATATCTTTCAAAATGCTGaatgttttctgttctcttGCAAATGCTATTGCTTTTCATGGTGACAGATTAACTGCATTACAATATCTGGTCCCATAGAGATCCAGAACgttaatatttacacattccatatttaatttgttgacaaataataaaatatttacagtttcaCAATGGTTATTAAGTAAACTTTGcttatgtatttttgattttaaacagaagTGTGACTTTGCTGTCTTTTATGATGCCACTAATATACAATTTCCATTTAAACCCCAAACTAAAGCAGTATTCTCATATCTGACCCTGCCAATCGATTGATtgttttagaattgtatttaattatataaagttTGATGTGGTGCACATATTGTTCTGGGCAATGGACACATTCAGCTATGGTTGCCGGAATCCAGTAACTGattgtaatatatttctgaTGTATAAATACAAGTTAACTAGAACtggaactgaaaaaaaacaagaatttgAATTATACTTTCAATTAGTtactttacaatttacacacactttacaacgcccccccaccaccacttgTGAAAGGCCAGGAATTAATCATGAATGACCAGTGTCAGTAATTTGAGTGATGCACTAGCATCATCTAATTCAAGAAGTAACCACTAAATAAACCAAGAGTGGTTCCAatctttttaaacaatgtagAGAATGAGTACTGACACACGCTGTATAAAGCTGAATACATAGAAGTaagaaactaataatttccGAATAAAGCTCATAATGTAAACACCAATTGTTGCATTATAATGACCTTTGATGATGTATTGTAAATACCTCGGTAGAGCATGCCTTGAATATTGGAGATGGACTTCTTAATGTCACTGCAAGCTGTTGTACTGACCTGCCTTCTGTGTTACCGCTCCGACAGTGAGCACACACTTGTGTAAAGACCCGGGTCACACAGTGCCTCTCGTCCCTCTATCCCTGTGCTCCGTCTCGTGCCACAGCTGTGCGGGATGTCTGAGGAAAAGCATGCTTTTGTAACATCTAGAGCCGAGCTGTAAGTAAATAGAATTAACCCACCTGGGCTGGTGTTTCTCATTCATTACACATGCTTAATGAAGACTAGACTTTTGCTAGACGGTTGCTGGAGTAGATGCACTGAGCACAACTCTCAAGTGGACATGCACAACTACAGGGCAGAATAACTcgcatatattttgtaagaagTAAAACACTACTACTAGATATGTTACCATTTACACATAATGACTAGAATTAGAATAATGACCAGATTCCATTAATTCTGAAGCAACACCATTTGTTGTTTAAGACTCACTTcatgactttattttaaatcacagaattTGTACTGATTTGGTCACACTAGTGTATGAATGTGGCAATTTTGTATATCAGTATCCTATATTATTCTGTATCTGCATCAACATCAGTCGATTATTTATGCAAATCTAGTCTGCTTAGATATCGCCTGTGGCTGTAGTACAAACTTCAGATATAGGAATAACTTTCGTTGGGAAGAACACGTATTTAGAAGTCTTCCagacaaaagtgcagtagtttTAAGTTAAGGTTAAAAATACTTATGTCatataaagtttattattatttgaacagGATatgattactttaaaatatgattttcccATTTGGATGTAAACTGAAATAGACAAACGCTTAGTGCATTTGAAACGTGAGATTTGATGGAGACTATTATCTGTATGAGCACCAGGGGGCAGCACTTAAACAGAAAATGGTCAAAAACGGCGCTGCTGTGCATTGAGCGCAGAGACGTCACAATGATTGGATGGGTGTGATGTGACACATTTTGATTGCAATGGCGTGTAGAAGAATGTGATTctttaaaacgaaacaaaacaaaaaactaaaattccCAAATGCACTGATTCTGTATGGCTGTGTGAAAGACTGGCGCCTGACAGTGTCATGTGACATCCTTTGACAGGGGCGTGGCTTGATTATAAtatcatttctttcttttctttttcttttttttttaataataaacccCATTTATCACACACTCGTTTTGATATTATCATGTTATAATTGATACACCTATTAATGCCACACATCTTGCAAATATGTACCACATTAAAGGCGTATGATTGTAATAAATCTGGTTAGCAATGATCTTGCATATATAAATGCTTACCAGTGCTTCTGCTGAGTTAAAACACACTTATGATATGCCTTTATGCATTGATGTGAAGCATAAATGGCTTTTTGTAAACATGGCAAGGATATGTAATTCCCCTGCTTCAATAAAGCTTAagtgatatttaatattgtgg

Function

GO: NA

KEGG:

id description
K10420 DYNLT; dynein light chain Tctex-type 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86117 lncRNA downstream 42178 7625985 ~ 7626375 (-) True G68905
TU86087 lncRNA downstream 202891 7465409 ~ 7465662 (-) True G68875
TU86086 lncRNA downstream 208664 7455978 ~ 7459889 (-) True G68874
TU86077 lncRNA downstream 227381 7440500 ~ 7441172 (-) True G68867
TU86070 lncRNA downstream 252038 7413729 ~ 7416515 (-) True AMCG00014278
TU86202 lncRNA upstream 198895 7874153 ~ 7874358 (-) True G68981
TU86291 lncRNA upstream 459645 8134903 ~ 8136194 (-) True AMCG00014297
TU86331 lncRNA upstream 551236 8226494 ~ 8250561 (-) True G69086
TU86493 lncRNA upstream 1215298 8890556 ~ 8890839 (-) True G69233
TU86513 lncRNA upstream 1323168 8998426 ~ 8998626 (-) True G69250
AMCG00014280 mRNA downstream 88453 7569311 ~ 7580100 (-) True AMCG00014280
AMCG00014275 mRNA downstream 232447 7426221 ~ 7436106 (-) True AMCG00014275
AMCG00014279 mRNA downstream 242877 7425128 ~ 7425676 (-) True AMCG00014279
AMCG00014278 mRNA downstream 246839 7414033 ~ 7421714 (-) False AMCG00014278
AMCG00014276 mRNA downstream 257015 7402152 ~ 7411538 (-) False AMCG00014276
AMCG00014287 mRNA upstream 55756 7731014 ~ 7751865 (-) True AMCG00014287
AMCG00014286 mRNA upstream 77648 7752906 ~ 7783002 (-) True AMCG00014286
AMCG00014291 mRNA upstream 345727 8020985 ~ 8060018 (-) True AMCG00014291
AMCG00014297 mRNA upstream 459964 8135222 ~ 8138788 (-) False AMCG00014297
AMCG00014296 mRNA upstream 466931 8142189 ~ 8147008 (-) True AMCG00014296
TU86071 other downstream 245262 7417598 ~ 7423291 (-) False AMCG00014278
TU86038 other downstream 287773 7378088 ~ 7380780 (-) True AMCG00014271
TU85055 other downstream 4839409 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 5024646 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 5125856 2540317 ~ 2542697 (-) False AMCG00014134
TU86293 other upstream 462073 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 480971 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 708027 8383285 ~ 8384224 (-) True G69156
TU86630 other upstream 1635193 9310451 ~ 9317167 (-) True AMCG00014328
TU86854 other upstream 3121458 10796716 ~ 10798147 (-) True G69537

Expression Profile