RNA id: AMCG00014286



Basic Information


Item Value
RNA id AMCG00014286
length 4272
RNA type mRNA
GC content 0.46
exon number 17
gene id AMCG00014286
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7752906 ~ 7783002 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGAAGATGATGGCAGGGGAGGCGGAGGACGAGATCCCTGATAATGTCCCCAGCAAATTCTGGTTGAAAAATGACAAGGCTCTCCAGATCTCCTGCGGGGATGAACATACAGCGCTTATAACAGACAATGGGAAGCTGTACATGTTTGGCAGCAATAACTGGGGCCAGCTGGGTCTGGGAACAAAGGACACTGTGCACAAACCCACTTGTGTGAAAGCTTTAAAGTCTGAAAAGGTGAGGCTTGCGGCATGTGGGAGAAACCACACACTCGTATACACAGGGCAAGGGAACATGTATGCTGCGGGGGGCAATAACGAAGGCCAGCTGGGCCTCGGTGACTGTGAGGAGCGGAGCACTTTCCACCGGTTAGACTTCTTCAACAGCGACAGTCGGATCAAGATGCTGGCAGCAGGCTCCAACGTCTCGGCCGCTCTGACTGAGGATGGCCAGCTTTTCATGTGGGGGGACAACTCTGAAGGTCAGATCGGGCTGGCCAAAGAGAACAGCGTGTCCGTTCCTCGGGAAGTGAAAGTGGGGAAGCCGGTTGCCGCGATGTCCTGTGGATACTATCACTCTGCGCTTGTGACTGTGGATGGGGAGCTGTTCATGTTCGGGGAGTCCGACAACGGGAAGCTGGGGCTGCCTCCCAAGCAGATGACCAACACCCGTGTCCCGCAGCCAGTGCGGGGCATCCCGGGGAGGGTGACCCAGGTGGCTTGTGGGGGTGGACACACAGTCGCACTTACAGAGGATGACCTGTATTCATTTGGGCTGGGTCAGTTTGGACAGCTGGGACACGGGACGTTTATTTTTGAGGCTTCTCTCCCCAAGGCCGTCGAGCACTTCAGAAAGAGGAAAGTCATCCATATAGCATGTGGGGAGAACCACACGGCTGTGATAACAGACAATGGCCTTCTGTATACATTTGGAGATGGGCGACACGGAAAGCTGGGTCACGGGGAGGAGAATTTTACCAACCAATTCAAGCCGACCCTGTGCTCCCGGTTTCTGAAGTACACAGTGCAGTCTgtgaTGTGTGGAGGATGTCACATGCTGGTCCTGGCTGTCCCTCGGCCCAAGGGCTCTGGTGACATCATCCTTCAAGAGGATGACATCACTGAGAACTATCTGGAGAAATCTTACACTGAGCTGTTGGGGGACTCCTCCGTTGCTGGCTCGCTGAGGAGGACACTGTCGGCTCGTGTCAGGCGCAGAGAAAGGGAGAGTTCTCCAGAGCAGTTTGGGCTGATGTTGAGGACGCTGCCCCCACTGAGAGCGGGATTCCTCAACTCCTCTTTGCCCGTCCCCAGCATGTCTGTGCCTGCTAGACTGCCTGGCATGGACCTGCCTGATGCCAAGCTACCCAACGGACTCCACAGCCTAGCGGCTCCAACAACGGATAAGGAATCGAATGGGGCAGATGAAAAGGCTTGCAGGGTCGAAGACTTGGATGATAATAACAGTGAGAAGGATCTTGGAGACACCACTGACCTGCTAAACATGACCCATGTAATGACGATGAATCCCAGTGACAAGACATTGACATTATCACCAGTTCTCAAGGACAAGGAAGTGGATCACAGTACTGCAGAGGAgagtgaggaagaggaagaggaagatgaggaggaggaggaggaggaggaagaggaaaaggaaaagtctGTTGAGAAGCCCCAGCCTGAGTCAGCGACAGGGGAAGGCCTGTCTCGAGAGCGATCACCGAAGGACTCTGGAATTGCAACGGTAGAGACTGTACCAGATGGCGTGCAAAAAGTTTCTGAAGTGTCGGGAAATCCAAAAATTCAGGAGGAAACTAATGCACAAGGTGACGGAGACCGCGGATCAAAAGAGGATTTGAAACAAAAGGGCATTTTTGGGACAAACAGAAAGATGTCTCTTTTCAAGCGACTGTCGAGCGAATCCAAGAAGCCAGAgaggaaagaagaaaggaaacgAGACGGCGTCCAGGAAAACGAGCCCCCCGTCCCAAATCCCAGCATGCACCCTGGCCACGAGGAGCCCAGCGACCTGAACAAGAATAACACCAGCGAGATCAGCCGGAGCCTCACCCTTCCCCAGCAGCGGGGGCCACAGAAGAGAGAGGGCCCCAGTGACAGGAGGTCCCACTCCTCCACATGCGCCCTGCTGTGATTGCCCACAGGTTTAGTACACCTGCTTCACTGTGCCTTGGAAGACGTGCGTTTGTGAAGGCTTTAAACTAGCAATAGTAAACGCATCCTGCAGTTTACTCTCTTTAATAAAGTGTGGGGCGACTTTTGAGTTGCTCCGTCTATTCTACCGCTTATAACTCAAAACGCTGCAACACATATGTTCGTAGAGCTACGTGTGCCTGCACTGAACTCCCACGTTTCTCCACCGAGGTTCTTGATTGCTGTAGAGCAGTTGTGTGGTCTTGGGGAGGAAcgcaaaataacacatttaaaagctgACAAACCAAAGGTCAAGGATTGCAACATAGCGTAAGTGCTGTTCCCCTAGCGGCAGATCTGTGGACGCGTTTATCATGACCTGCTGCGTTTGCACACTTAATTCTCCCGATATATTTGTTACAGTTTGGGAGTGAACTTGTAAGAGCTGGAACATATCGAGTAACCTAATCGTTAACTTGCATCTTCAACCCATTAAGGAATGTGACATTTGGCTCTGTACTTACACACTTTTACTTTAATCTataattaagtttatttaaGAGTAGGTTACCCCTTTTTATGTCTTTAAACTGAGGTATGTTACATACAGTAATAAATATCCTCTGACAACGTAATTGAGGAACCAGGGTGGGGGGATTTGGCGCTTTGAGGAGACGTTTCCAGAGTTTGTTGTAACTTCTCTTTCACAACAACGTGGATTAGAGGGAGAGCATTCGAGCGAATTGCCCCTTGAGAAAACGCACTCAGGAAAGCATTAACGTGAGCACATTGTCCAGAATCAGCTGCTCGATTAATGTCATGCAGACTGTTATTCCTTCTGTCAAGTCCAAGTGTGGAAAGGGGGGCTTAGTGCTGTTACGTAAACGCAAAGAAAGCAACAATACCGCTGTGTTCTCTGATGGACACATTGGCTTAGAGTTTGAACTGGgatgaaaataatgatttcaaacTGCCCCCTCTTTTGTGGTTTGGATTTACAGACCACGTCATAGTGTACACTGCAATTCTTAATTAAGTACCCCTGTTCCCACCTATTTACATTATGGGAGGTGATTGTAATTTATAGATTtgattacacttttaaaatcgATGTAAAGCTTTACATTACTACATTAGAATGATATATTATTGAGGAAAAACACTAGAaagattatttacattttaacgAGTGCCCCATGATGGAAACTGGCCCTAGAACTGCACACACTGCTGACAGTTTTCAGCTTTCTTTTATTTCGAAGATGTGGCTTCAGACGCACTGTACTTCTGGGGGTTGTTTCAATGTTTGTAGACATTTGTGCCATAGGCATTCTCGAATAGTATTGTATGCTTCGTCACTTTCCAGGATCCAGACCACTACAGAAGAACGTGttcattcagtttattttctttttgtttcaggGTACAAAGTCAAAAGCACCCCTGTTTCTCAAAGTCAAcaattgtgatcacagttttttttaatgtaactgtggattcagtgtttttatatatatatatatatattcataatataacTCACATCAACATGACAGAAATGGTCTCCGTTTTGGAACGCTGTCTTCATccgtcatttttattttatttatctttttttttttttttttaccgaaCTACCAAGCCATCGCAAAGATGTGCTGTAAGTTTATAGACATAAATGGTCGAAtacttatttttacaaaaacaccTACTATTCTTCAACTTTTCtacactaaaatgtttttcttgtcctgtacttaatacatatatgtgtgtgtgtgtgtgtgcgcgcacgTGTGCCTTTTGGTGATTTTTctataattaaacatgtattgatgtggaaaaaagtaatatacagGTGAGAATTGTTGCagttgtgaaaatgtacatatttgtcaatgtaacatatatttatttatatacaatttaaataatgtaagagCACAAACGgcactttaaatgtgtatattgtaatCTGTTGCAGTGAAATGTCTGTTTATGACACATTCTCTGTGTGGCCTTTATAGGGCATCATATTTTGCATGTCTCCTTTTTTCTCATacctaaatgtgaatgttttggAATGTGTCCAATTGTTTGAACAGTAAAAGTAAACatatttg

Function


GO: NA

KEGG:

id description
K19607 RPGR; X-linked retinitis pigmentosa GTPase regulator

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU86117 lncRNA downstream 126531 7625985 ~ 7626375 (-) True G68905
TU86087 lncRNA downstream 287244 7465409 ~ 7465662 (-) True G68875
TU86086 lncRNA downstream 293017 7455978 ~ 7459889 (-) True G68874
TU86077 lncRNA downstream 311734 7440500 ~ 7441172 (-) True G68867
TU86070 lncRNA downstream 336391 7413729 ~ 7416515 (-) True AMCG00014278
TU86202 lncRNA upstream 91151 7874153 ~ 7874358 (-) True G68981
TU86291 lncRNA upstream 351901 8134903 ~ 8136194 (-) True AMCG00014297
TU86331 lncRNA upstream 443492 8226494 ~ 8250561 (-) True G69086
TU86493 lncRNA upstream 1107554 8890556 ~ 8890839 (-) True G69233
TU86513 lncRNA upstream 1215424 8998426 ~ 8998626 (-) True G69250
AMCG00014287 mRNA downstream 1041 7731014 ~ 7751865 (-) True AMCG00014287
AMCG00014284 mRNA downstream 77648 7668553 ~ 7675258 (-) True AMCG00014284
AMCG00014280 mRNA downstream 172806 7569311 ~ 7580100 (-) True AMCG00014280
AMCG00014275 mRNA downstream 316800 7426221 ~ 7436106 (-) True AMCG00014275
AMCG00014279 mRNA downstream 327230 7425128 ~ 7425676 (-) True AMCG00014279
AMCG00014291 mRNA upstream 237983 8020985 ~ 8060018 (-) True AMCG00014291
AMCG00014297 mRNA upstream 352220 8135222 ~ 8138788 (-) False AMCG00014297
AMCG00014296 mRNA upstream 359187 8142189 ~ 8147008 (-) True AMCG00014296
AMCG00014295 mRNA upstream 365385 8148387 ~ 8155403 (-) True AMCG00014295
AMCG00014298 mRNA upstream 372930 8155932 ~ 8158488 (-) False AMCG00014298
TU86071 other downstream 329615 7417598 ~ 7423291 (-) False AMCG00014278
TU86038 other downstream 372126 7378088 ~ 7380780 (-) True AMCG00014271
TU85055 other downstream 4923762 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 5108999 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 5210209 2540317 ~ 2542697 (-) False AMCG00014134
TU86293 other upstream 354329 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 373227 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 600283 8383285 ~ 8384224 (-) True G69156
TU86630 other upstream 1527449 9310451 ~ 9317167 (-) True AMCG00014328
TU86854 other upstream 3013714 10796716 ~ 10798147 (-) True G69537

Expression Profile