RNA id: AMCG00014291


Basic Information

Item Value
RNA id AMCG00014291
length 5484
RNA type mRNA
GC content 0.60
exon number 14
gene id AMCG00014291
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8020985 ~ 8060018 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGCGACCACGGGAGACAGAGGCCGGGCTAGAGCGGACGTCATGCTCTCCGCAACACCCCTGAAAGTGCCTGTAACCGATGGCGAATCCCAGAAAAACAGGTTGGAATTGAGAGAAGACAGTCACCTGACGCCAAGCATGGTGGATGCTGGAGCGGCGTGTAGGATGAACACGCTGGCGGCTCTCAGCATGGACCGCAGCGGCCTGATGCGGGAGAGCCTCCGGGTGCACGGTGGCATGGTGTACCCGGGCATCCGAGCGCTGTCTGCCGACAAGACGAGGGACGGATCCGGAATGCCCCTGGGCTACATCAGCGACCGCATGCCGGAGCTGCGCTACAAGCCCGCCGAAGTCACACTGGAGAACCGGAAGCCGCCTAATGGCTACGGCGGCCTCTATAAGAGCCCTCCTCCCGGGCTGCAGAAACCGATGATCGTCCCCGGAGGCGGAGCAGAAACCCTCGGGCTGGACCGCCGAGTTGGGCCCGGTGATAAGGCATCTGAGCTGGGTCTGAATGGCAGCAGTAGCTACCTGCGCCTCCCCTGGGTCAGCCCGTACCCTGAGGCTGGGGTGTACCCGTTCCTGGATTCAGCAAAGTATGCCCTGAACATGTATAAGGCCTCCTTTCTGTCCCAGCATTCCCCTTACTTGCCCCAGCCGTTGGCCTACCAGTCTGTGTGCGCTGGTGCCGGGGGCAGTGCTGCTGGCAGTGAGCGCTTTCTCTACCTGCCCCCTTACCCTCCTGCCCCCATGACCTCTTCACTGGCACCCCCGATGAGGATCCCTACCGCCACCGTGGCCCCCACGCTCTCCCCGCTGTCCTCGGCTCACATGGAGAGCCCTTCGGACTTCCAGAAACCATTGCCCAGAGGGCCTCCAGTTTCATCCtcctctgctctctcctcctcctccccctcggTGTCCCTCCCTTTCTCCTATATGAGCACCTTGGCTCCAGAGCACCCTTCGCCGGTGCGGCCTACCAGCCATAAGTCCAAATCCAGGGAGGGGACAAGCGAGCACAGAAGTAGTGGAGGGGAGAGGAAAGCCAGCAAATCTCCTTCCAAGACGACGTCAGAGAAGCAGCCCCACCAGGCTCCCGCCAAAGACCCTGCAGATAAGCCTTTGGATTTGTCTGCTAAAATGGCGGGCTTTGGAGTCCCTCCCAATGGATTCCCCCCCAAACTTGAAGGCATTGCCAAAATGGGACAATCTCCGACGCCCCGATATGGGCCTCCCAACCTGGAGCTTCTTAAAGAGACTTTATCCCCTTCCTATCCTGGGGTCAGCACTTCCTCCAAACCTCAAGAGAGGCCAGAAATAATCAGCACTTTACACTCCTCCTGGGTGGTGCCGGGCCCCAATCCACTCACTCCCGACTCCAGCCAAAACAAGGGCACCTccgtaattaaaaacaagactCTAGAACGCGTAATGCCCCAGCAGCGTAGCTCCTCCTGCCCCAGGATTGGGGAGTCCAACAATAGCCCTGCCCCCAATCCTGCCCCAGCCGTGGTGCCTGCTTTGGGCCGCCCAGCCTCTGCTTCCCCCTCTCCCAATATCAATGGCGAATGGCCCAAGGCAAATCCCAGTCTCCCAGAAAAAGTCCCCCAGCCCAGTCACATCAGCAGCCAGCCGTCCTCTGGCAAGCCGGCAAAAGCCCCTAAAAGAGCAGAGACCCAGGAAATCATCCATAAACCACCCCAGCAGCATCATGAGAACGGGCACACTCCCAGCCCCCTGTATTTACCACAGAATGAGGCATTCCTGCCTCCAGCTTTGGCGTACGCCAACAGATACTTGACATACTCTGTCCCAGAAGGCCTGCCTATTCCTCATTTACCTCTGCCGGGGAAGGGCCCTGTTTACCCCCATCCAGTGTTGCTGGGCAGCAGCAGCCTGTACCCAGCTCGCCTGACTCCAAAGCACGGCCTTCCGTATGGCCTGCCCTCTGGACGTGGAGAGTTCCTCACCTATCACGACTCTCAGGAGATGGTCCACCCCTTGATGTCGCCCCATCTCACTCTGGACCCCAAAGTGAACGAGAGGCTGGAGCGCAAGTCCAGGTCCCAGGACCGACCTCGACATAATGAGGATGCCATTCCCAAAATCCGACACCCAGCGGAAGCCGCAGATCCTGCTCCCAAGCATGAGAGGGAATCTGAAAAGCTGGCGAGTCAGGGAACCAAGCCACAGAGCAAGCCGCTGGCAgtggagaaagagaaaatagtttGTATTGACTTGATCCAAGATGACACAGATGGAGCCTCTCAGACGATGAAACACAGTGTCCCCAGTGCCAAGAAAGGAGATGCCACCAGGCCACTCGGCAGCAGTATCTGTGGCAGCAGCACCGGCACTAGTGAGGGGAAAGAGCCAGAGCTAAAGCAGCTTCTTCTCTCCATCCAGGCTGTTGCTCACAGGCCAGCTGAACCTGAGAAACAGCCAGAGATGTGCAGCCCACCCAAGCTGCTGGAGCAGAGCTACCCAGTGCCCAGTCTCTGCAGGGAGTACCTCTCCCCGCGACAGGACCAGGGCCAGGGGAGCCCCGCTCAGCCCGCGTCACTGCCCGAACTCCTGGAGCTGCAGACTCTGCGCTGTGCCAGGACGTCCGGGGACAGAGGCGTGGAGGACACCGAATTCAAACACGAGAGTCGAATGTTCGGACTGGCCCGCTCCATTGAGTTGGGCAAGGAGCTCCTGGACGATGGGGAGACCCAAGACGAGGACGAGGATGAACACGGCTCCTGCAGGTCCAGGAAGTCCAACCTGACCAAGAGGATCGCCAACTCGTCCGGCTACGTGGGCGACCGCTTCAAGTGCGTCACCACGGAGCTGTACGCAGACTCCAGCAAGCTGAGCCGGGAGCAGCGTGCTCTGCAGCGTGCAATGATGCGCTTCTCCGAGCTGgagctgaaggagaaggagggTAGTGGAGCGACGGGAAGAGACCTGGCAGACGGCCAGCCCGGCGTGAGCGACTGGGAGGGCAGCGAGAAGACCGCCAAGCACGGGGGCAGTGCCCTGAGGGAGGAGTGCGAGCGGGACGGTGTGCTTCCTGTGTCTGGAAACCACAAGAGCTGCCTCCCCCGCAGCCCCGCCAGAGAGCGCGAGGACCGGCCTCTCGCAGAGCACGAGAGGCTGAGGGAGAAGGAGCGGGGAGAGGGGGATGAGGAGGAGCGGGAGGCAGGCTGCGTGGCCCCGGGGGAGCAGCCTCCATGCTCACAGGCGGCGGAAAGGCAGCCGAGCCAGCCGAGAGAGGAAGTGAGCCCAGGCGCTGGGCCTGTGCCGGCCAGGAAACGCAAACACAGCAAGGAGCGTCTGCAGGACGAGCTGCCCGGCGGCGAGGGAGGCGCAGAGGAGCCCagggaggcggaggaggaggagggggaggaggagcgCGCGGCGGCTGCCCAGGGGAAGAGAAAGAGGCTGCTGACGGATGACTGGCCGGAGAAGGAAATTACCAGCCCTTCTTATGAGCACGTCTTGGAAGAGTCCTCTTGTAAGGAAGTGAAAAACCTGAAAGTGTGTATCGAACTGACCGGCCTGCGGCTCCGCAAGCAGCCACACCTGCTCCAGCTCAGGGAGTTGTGGGAGAGGCAGGTCTCGTCTCAGAGGTCGGTGCTCGGCGGCGCCCCGGCCCCAGCCCCGCCCCCGCTGCACCCGGCCGAGCCCTGCCTGCCAGAGGTCACAGGGAAGGACAGAAAGGTCAAAGGCAGCTTGGTGGAAGAGAGGCCCACCAAGAAGAGGTCAGAGGGCAAAGTCAATAGGAGCTGGTCTGAAGAGGCGCTCTGTAAGAGTGACATTGAACAAGGTCTGGCTGCTCCTCCTCTGACCCCGCAACACAAAGGCTGCCTTGACTCGCCCCCCACAGATGAAGCAGTTGCTAAAAAGCCCCCCCAGGCAGCGACCAGGCTCTCAGACAAGAGACAGCGGCTGAAGGAGCATCGCAAAGCCAGCGGGCTCgggcccccctcccccagcgcCGGCAAGGACAGCGAGACGTCGAGTCCCCGACTGCGTAAACACACTGACCCTGAGAAGCCCAAAGGCAAACGGCAGTGCAAGACTAAGCACATCAGCCTGAGGGACAGGAGAAGGACGTCTCAGACAGCCGAGGAGAACACTGACCTGGAGAACTCGTCAGAGCAGAAGGTCAGCCTAAAGAGATCCTCTCGGAAGAGACCGGCATCTCTTCTGGACTACGACGCCTCTCCCATCGAGCCCTGCCACCCGGAGCTCCCTCCTGCTGTGTCCCAGGCCCCCACCTCCCTGCTGTCGCCCACCTCCCACCCCTCTCCGCTGCCCGTCGGCACCCCTCCTCTGGACACCCCCACGAGCCGGCCCATGCCACCTGAAGCGCGACGGCTGATCGAAGTGCTGCTGTACTGCCTGGAAAACAAGGTGTGTGATGTAAATCACCGTGACAATGCCGGCTACTGTGCTCTGCATGAGGCCTGCGCCCGGGGCTGGCTCTCCATCGTCCAGCATCTCCTGGAACACGGAGCCGACGTGAACTGCAGCGCCCAGGACGGCACCAGgcCGCTTCACGATGCTGTGGAAAACGACCACCTGGACGTGGTGCGGCTGCTGCTGTCCTACGGCGCCGACCCCACGCTGGCCACCTACTCCGGCCGTAGCGTCCTCAAGATGACCCACAGCGAGCTCATGGAGACCTTCCTGTCTGATTACTTCGCTGACCTGCAGGGCCGCGATGATGATGACCCCGGTCTGTACTGGGATTTCTACGGCAGCTCTGTGTGTGaGTCCGCCGAGGACTTGGCTGCCTTCGACATCCTGGCCAACCCGCCGGGTCCggaagaggaagaggacgaGCAGAGAGACGTGTTTGAGTTCGAGTTCTCGGACCGCCCCCTCCTGCCCTGCTATAACATCCAGGTGTCTGTCTCCCAGGGTCCCCGCAACTGGCTGCTGCTCTCGGACGTGCTGAAGCGGCTGAAGATGACGGCGCGCGCCTTCCGCTCGGCGTTCTCCCACCTGGAGGTGGCCACCATCGCCGAGGCCGAGTTCTACAAGCAGGCCTCGCTCAGCCAGCTCTTCTCCTGCCCCGAGGAGCTGGAGGCCTTCGTGCCCGACAGCAAGGAACTCTTGGACCTGGTGGAGTTCACCGCTGAGCTGGTGGCCCTGCTGGGCTCGTCTCTGGAGTGCCTGGACGACCGGTGGGACGCCGCGTCTCGGGAGCGCTCCTGACCCCACGGACTCTCGGGGGGGAGACGCGGTTTGGCCTGTTCATAGTGTACATAACCAGAGCACGGTGCGGACTGGATGGGGAGGACACTAAATCCCACCCCCTGGACAATGAGAAGAGAAGGACTTTTTAATTTAACGAttaccttgtttttattttatttttataaatatataaatatatatatataaatatttcttgttttggtctgtttttattattttataatactgCCTATTTCTTttctcctcctttttttttttttttttgtct

Function

GO:

id name namespace
GO:0021915 neural tube development biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:1902254 negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator biological_process

KEGG:

id description
K23215 BCOR; bcl-6 corepressor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86202 lncRNA downstream 146627 7874153 ~ 7874358 (-) True G68981
TU86117 lncRNA downstream 394610 7625985 ~ 7626375 (-) True G68905
TU86087 lncRNA downstream 555323 7465409 ~ 7465662 (-) True G68875
TU86086 lncRNA downstream 561096 7455978 ~ 7459889 (-) True G68874
TU86077 lncRNA downstream 579813 7440500 ~ 7441172 (-) True G68867
TU86291 lncRNA upstream 74885 8134903 ~ 8136194 (-) True AMCG00014297
TU86331 lncRNA upstream 166476 8226494 ~ 8250561 (-) True G69086
TU86493 lncRNA upstream 830538 8890556 ~ 8890839 (-) True G69233
TU86513 lncRNA upstream 938408 8998426 ~ 8998626 (-) True G69250
TU86641 lncRNA upstream 1289770 9349788 ~ 9355238 (-) True G69352
AMCG00014286 mRNA downstream 237983 7752906 ~ 7783002 (-) True AMCG00014286
AMCG00014287 mRNA downstream 269120 7731014 ~ 7751865 (-) True AMCG00014287
AMCG00014284 mRNA downstream 345727 7668553 ~ 7675258 (-) True AMCG00014284
AMCG00014280 mRNA downstream 440885 7569311 ~ 7580100 (-) True AMCG00014280
AMCG00014275 mRNA downstream 584879 7426221 ~ 7436106 (-) True AMCG00014275
AMCG00014297 mRNA upstream 75204 8135222 ~ 8138788 (-) False AMCG00014297
AMCG00014296 mRNA upstream 82171 8142189 ~ 8147008 (-) True AMCG00014296
AMCG00014295 mRNA upstream 88369 8148387 ~ 8155403 (-) True AMCG00014295
AMCG00014298 mRNA upstream 95914 8155932 ~ 8158488 (-) False AMCG00014298
AMCG00014300 mRNA upstream 106224 8166242 ~ 8186240 (-) True AMCG00014300
TU86071 other downstream 597694 7417598 ~ 7423291 (-) False AMCG00014278
TU86038 other downstream 640205 7378088 ~ 7380780 (-) True AMCG00014271
TU85055 other downstream 5191841 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 5377078 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 5478288 2540317 ~ 2542697 (-) False AMCG00014134
TU86293 other upstream 77313 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 96211 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 323267 8383285 ~ 8384224 (-) True G69156
TU86630 other upstream 1250433 9310451 ~ 9317167 (-) True AMCG00014328
TU86854 other upstream 2736698 10796716 ~ 10798147 (-) True G69537

Expression Profile