RNA id: AMCG00014292


Basic Information

Item Value
RNA id AMCG00014292
length 2364
RNA type mRNA
GC content 0.46
exon number 9
gene id AMCG00014292
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8120375 ~ 8127095 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGGCGGTCCTTTGTGAAAGCGTACCCATAATCCTCTGCGTCAGCGACCGAGTGCCGGAGAAGGAAGATGGAGGACTGCGGGAGTTCAAGAAGGATGGACGCTTCCCTGATGGCGGCGCTTCTGGTCTTGGTGTCTCTGTCAGCGGTTTCACAGTGTTGAAAGCCCCAAAGTATGTCAGCTTCAGGGAAGGCGAGTGGCCTGTGTCCGGGGAGAGGATCCCAGACCTCGTGGCTCTGACCATGGGCTTCTCTGTGGAGGAGGAGCTGTCGTGGCCTGGCCTGCAAGGTGGCAACCTGTTCCAGCGTCCCCAGGCCAACTTCCTCATCGTGGTGAGGGGAGTGGGCAGCCTGCCTCTGCCCCAGCCTGCAGCCTCGTACCCTGTGGAGAATGCTGTCCCATTCACCTTGGACAGTGTGGCCAACACAGTCCACACTCTCTTCTCAGAAGACACTCCTGTTGTCTTACAGCTGGCTCCCAGTGAAGAGAGGCTGTACATGATCGGGAAAGCCAACACGGTGTTTGAAGACCTCCCTGTCACTCTGCAGCAAATCCGGGGTCGCCTGTCGCAGGACAACTCCATCCTCAACAGCCTGCCGCCCAACTCGCTGAGCCGCAACAATGAGGTTGATCTGCTTTTCCTTTCTGAGTTGCAAGTCCTTCATGATATCGCTGCTCTGCTGCTGAGGCACAATCACCTGGCGAAGGACCATTCCCCTGACCTGTACTCGCTGGAGCTGGCCGGGCTGGAGGAAATCAGCCGGCACTACGGCCCCGACTCGCAGCAGATGAAGGATGCCACGCGCATCCTGGCCACCCTGCTGCAGAAGTTTGCAGATGACGTGTTCGGCATCTATAGCCGGAACGCCGTGGTGGAGGTGGTGACGGTCAAGAGCTTCGAGTCGCCCCTCATGAGGAAGTCCCGCTCCATCCTGCAGTCCATCGAGATCGGCAACCCCGGAAGCCCATATAACCTGGCCTATCGGTACAACTTTGATTACGCGGCGATCTTCAACATCATGCTGTGGATCATGATCGGCCTCGCCCTGGCAGTCATCGTCATCGCCTACAACCTGTGGAACATGGACCCGGGTTACGACAGCATCATCTACAGGATGACCAATCAGAAGATCCGCCTGGACTGAAGCATCCTCTCCTGCATTCCCTCCCAGctgatttgaaaatgaaactatttctcttccccccccaccccccgccctTTGCCAAGTAGCCTGGGTTTTAAAGTCTGGCCTTTccttttcaaaaccacaaatgtcttgtaaaaagtaaataaatgttaaatgcagtTATAGACAGTTTTTATGATAATATTATATGCACCTCAGAATAATTGAAGGTCAGTTTGGCTCATTTCACGTTACTTTCATTTACAAGGTTTAATGAAGGCTTTCTAAAactgtttactttgatttttttGTGAGAAATGCTTCACTTTtccagatgtattttttattcagttttaagtgGAGCAATGAATAAAGTAAAACGTGTATTTGTACAGATATTTATCTCTAGAAGCCCCACTTTACCCCAGGCCAGGCTACATCATTccttctgaaatgttttaagaGTGGTTGATTCTCCCTACAAATGATATTGTCCTGTGTTCGTTTTGTATGTCGTTGTTGTCGTTTTCTTTTTGGCACTGAACTAAGGAAAGAGGATCTGACGGTATgccttttctctctgtgttgtcagtgtctgtgctggGACATGTTGCAcctatataatttaattgaacagcgttagatatatgtatatattgagaTAAGTGAGATAAGTGAAGAGATTGATACGGTCCTAATATCTCTCTGCATCCCCCCCGACTTAAATATGTGCAGTTAAAACTTGGATctttcacatttaaacacaacaaactGGAACTGTGACAATGAAATCTCTGGGGgttgtttccttttttgctCTGCTTTGTTAAACAAGCTTTTGGTGGAAAACGGTCAGAAACCTCCCTTGTTCTTGTAAATCTGGGTTTCAGTCAATCATCAGTACAGTCTGAATGGAACATTGTCctcaacaattaaaaaaatgcatacaactGTTAAACTACTTTTGCTAAACCATTGTTTTTAGTTATAACTTATTTCTTCACATGTATGTGGTGAAAAGGGGTTTTTGTTTAAGTCACACAATTATATTCTGTACGGTACTGTGTTGAAATTTGATGTAAGTGGTGGTAAGAACAAAACAAGGTTTATAATTAATTAGgattaatttgcataatgaGAGTACACTCGGTATGTACTGCAGCAgtatgtgtgtttggggggaAAAGTGATGTAATGTGAAActtgtaaaatacataataaatgacTGTCCATTAA

Function

GO:

id name namespace
GO:0035622 intrahepatic bile duct development biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K19514 ATP6AP2, PRR; renin receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86229 lncRNA upstream 105372 8014744 ~ 8015003 (+) True G69006
TU86203 lncRNA upstream 245633 7874527 ~ 7874742 (+) True G68982
TU86116 lncRNA upstream 493971 7625988 ~ 7626404 (+) True G68904
TU86061 lncRNA upstream 651065 7469078 ~ 7469310 (+) False AMCG00014272
TU85947 lncRNA upstream 1062056 7056707 ~ 7058319 (+) True G68771
TU86247 lncRNA downstream 6193 8133288 ~ 8136210 (+) True G69023
TU86463 lncRNA downstream 607228 8734323 ~ 8735939 (+) True G69206
TU86492 lncRNA downstream 763491 8890586 ~ 8890834 (+) True G69232
TU86614 lncRNA downstream 1239442 9366537 ~ 9376350 (+) True G69326
TU86679 lncRNA downstream 1774355 9901450 ~ 9910048 (+) True G69384
AMCG00014290 mRNA upstream 117097 8000090 ~ 8003278 (+) True AMCG00014290
AMCG00014289 mRNA upstream 265024 7845556 ~ 7855351 (+) True AMCG00014289
AMCG00014288 mRNA upstream 324993 7783729 ~ 7795382 (+) True AMCG00014288
AMCG00014285 mRNA upstream 390484 7713389 ~ 7729891 (+) True AMCG00014285
AMCG00014283 mRNA upstream 455846 7659468 ~ 7664529 (+) True AMCG00014283
AMCG00014294 mRNA downstream 1109 8128204 ~ 8131793 (+) True AMCG00014294
AMCG00014293 mRNA downstream 33313 8160408 ~ 8161280 (+) True AMCG00014293
AMCG00014299 mRNA downstream 77727 8204822 ~ 8250935 (+) True AMCG00014299
AMCG00014306 mRNA downstream 136341 8263436 ~ 8321739 (+) True AMCG00014306
AMCG00014307 mRNA downstream 215906 8343001 ~ 8382284 (+) True AMCG00014307
TU86046 other upstream 703781 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 770908 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 3468411 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 3468411 4649200 ~ 4651964 (+) False G68475
TU84898 other upstream 5410046 2709024 ~ 2710329 (+) True AMCG00014146
TU86705 other downstream 1875963 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 6209763 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 7548536 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 7548536 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 8002430 16129525 ~ 16132802 (+) False AMCG00014508

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00041210 False 1619 mRNA 0.46 9 NC_007133.7 11123487 ~ 11136748 (-)
grasscarp (Ctenopharyngodon idella) CI01000030_07483843_07492567.mRNA True 1055 mRNA 0.52 9 CI01000030 7483843 ~ 7492605 (+)