RNA id: AMCG00014293


Basic Information

Item Value
RNA id AMCG00014293
length 561
RNA type mRNA
GC content 0.56
exon number 3
gene id AMCG00014293
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8160408 ~ 8161280 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCTCCATCAAGATCGAGTGTGTGGTGAAGGAGAAGTACAAGATCGGGGAGAGCCCTGTgtgggaggagaaggagggcaCCCTGCTCTATGTGGACATCTCGGGGCGAAAGGTGTGCCGCTGGAACCCCGACACCAAGCAAGTGCAGAGCGTCGCAACGGACGATTTTGTTGGCTGCGTGGTGCCGCGCCAGTCAGGAGGGTATGTCATCGGGGTGGGTTGCCGCTTTGCTGCCGTAGACTGGGACCAACAGACCATAACTACCCTGGCTCACGTAGACAAGGACAAACCCAACAACCGGTTCAATGATGGCAAGGTGGATCCCAAGGGACGTTTCTTTGCAGGAACCATGTCTCTGGAGGTGCGGCCTACTGTGGTGGAGAGGAACCAGGGATCTCTCTTCATGCTGAACCCTGACCACTCAGTGGTGAGGCACTTTGACCAGGTGGATATCTCCAATGGCATGGACTGGTCACTGGACCACAAGACCTTCTACTACATTGACAGCCTGTCGTTCAAAGTGGATGCCTTTGATTATGACAAGGAGACGGGCAGCATC

Function

GO:

id name namespace
GO:0019853 L-ascorbic acid biosynthetic process biological_process
GO:0032781 positive regulation of ATPase activity biological_process
GO:0050848 regulation of calcium-mediated signaling biological_process
GO:0006874 cellular calcium ion homeostasis biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0030234 enzyme regulator activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0004341 gluconolactonase activity molecular_function

KEGG:

id description
K01053 gnl, RGN; gluconolactonase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86247 lncRNA upstream 24198 8133288 ~ 8136210 (+) True G69023
TU86229 lncRNA upstream 145405 8014744 ~ 8015003 (+) True G69006
TU86203 lncRNA upstream 285666 7874527 ~ 7874742 (+) True G68982
TU86116 lncRNA upstream 534004 7625988 ~ 7626404 (+) True G68904
TU86061 lncRNA upstream 691098 7469078 ~ 7469310 (+) False AMCG00014272
TU86463 lncRNA downstream 573043 8734323 ~ 8735939 (+) True G69206
TU86492 lncRNA downstream 729306 8890586 ~ 8890834 (+) True G69232
TU86614 lncRNA downstream 1205257 9366537 ~ 9376350 (+) True G69326
TU86679 lncRNA downstream 1740170 9901450 ~ 9910048 (+) True G69384
TU86698 lncRNA downstream 1813144 9974424 ~ 10028351 (+) True G69400
AMCG00014294 mRNA upstream 28615 8128204 ~ 8131793 (+) True AMCG00014294
AMCG00014292 mRNA upstream 33313 8120375 ~ 8127095 (+) True AMCG00014292
AMCG00014290 mRNA upstream 157130 8000090 ~ 8003278 (+) True AMCG00014290
AMCG00014289 mRNA upstream 305057 7845556 ~ 7855351 (+) True AMCG00014289
AMCG00014288 mRNA upstream 365026 7783729 ~ 7795382 (+) True AMCG00014288
AMCG00014299 mRNA downstream 43542 8204822 ~ 8250935 (+) True AMCG00014299
AMCG00014306 mRNA downstream 102156 8263436 ~ 8321739 (+) True AMCG00014306
AMCG00014307 mRNA downstream 181721 8343001 ~ 8382284 (+) True AMCG00014307
AMCG00014308 mRNA downstream 224885 8386165 ~ 8401359 (+) True AMCG00014308
AMCG00014309 mRNA downstream 317702 8478982 ~ 8507687 (+) True AMCG00014309
TU86046 other upstream 743814 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 810941 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 3508444 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 3508444 4649200 ~ 4651964 (+) False G68475
TU84898 other upstream 5450079 2709024 ~ 2710329 (+) True AMCG00014146
TU86705 other downstream 1841778 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 6175578 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 7514351 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 7514351 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 7968245 16129525 ~ 16132802 (+) False AMCG00014508

Expression Profile