RNA id: TU86302


Basic Information

Item Value
RNA id TU86302
length 1562
RNA type TUCP
GC content 0.40
exon number 3
gene id AMCG00014298
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8155932 ~ 8158590 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTAACCCACTGAACTTGTCTAACTTGTGTTATAAAATACCTGTAAAGCCAATCGCAGGACTGTGTACAAGTTGGGGAAAGACGAAGGGATCCCAGATGGGATGTGCATTGACTCTGAGGGCAAGCTGTGGGTGGCCTGCTACAGCGGAGGACGAGTCCTGCGGATAGACCCGGTGACAGGTGAAAGAATCCAGACGGTGAAGCTGCCTGTGGAAAAGACCACATCGTGCAGCTTCGGTGGGAAGGACTATTCGGAGCTTTACGTGACCACAGCCTGCGAGGGGATGGACCAGGACTTGGTGGTTAAGCAGCCGGAAGCTGGAGGCATTTTTAAGATAACTGGACTGGGGGTTAAAGGAATTCCACCAAACTTTTTTGCTGGATAATCACACTTTGTGGTTTGCTGTTCTAGAAGCGTTAATGAAATGATTTAACTCGTATGACTTAAATTCAAAAAATTATAGTtacaaactattaaaaaaaaaaagtgttcctTATATAATACCTTAATTACCTTCTTAATAAATGTCTTTCCTTCACATTTATAGTCACCCAGGCAAAAGATTCATACTGGTTCATGTCATCATATCTGgtaataatgtacacattaaGCAGGGCATAAGCAATAACTGTGTTTTACTTGAACCACTGGTGTCAAATGTCCTGCATTGAGCCATAGCTGTACTGACCTGCTACCAGGAGAGGGTGAGAGTAGCCCAAACTAAACCTCATCCATCTGGCTGTAACGTTTTGGAAACAGGCTGCTGAGATTTGTAGAGAGGATCTAGTGAAACAAATCTTCAGTACTCTTCATGGTGTGTGAAAGCTGCAGTAAGGAAGGgaggtgaaaatgaaatgaaaccgAATGTGACGTGTTGAAAACTGGTGGTTAGACCGATGTGGCCAATTTATTTGGGTCTTACTGTGCCGTTGGGATGAAGTATGttattacagaaagaaaatgtatggaaTGAGAATTTTGGTAAGGAGTTAAAAAATTGTTAGAGCTTTGCTTATTGTgatatgaaatatttatatcttTCCTGGgcattaaattaacattaaatctACTGTGAATAGGAGGCCTGACTTATCAGGAAAAAGAATATTACACTGGAAAAGCTCAATAAATGCTCTATACataacaagtttttttttttttttttactgatctACAGATACTAGATAAAACACTTATTCCAGTTTCCTATTCCAGCATATTTCACTGTAACCCATTGCTGTAGCTGTTGTCTTcctctgcattttgtttcagtgccTAATGTTACATAATTTGTGTCACTGCCGTTTACTCTGTCACCTTGGCAGCTGTGTACCTTTTcgccatttttaaatgtgagtAACCTTGGACTGTGGTGTTAATATAGTTAATAGTTATAGTAATAATCATTAACGGGGAATAGACACACATTGCCAGTAGCTAGAACAATATTCTGTATGTCTTTTTATGCTGTTCGTGTTCATGTCTTTGCCACAAAGCTTGTTCACGTTGTTCATGTTGACCATTCTCGGCTCAAATAAAAGAAGCATACCATGCCAACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86291 lncRNA downstream 20035 8134903 ~ 8136194 (-) True AMCG00014297
TU86202 lncRNA downstream 281871 7874153 ~ 7874358 (-) True G68981
TU86117 lncRNA downstream 529854 7625985 ~ 7626375 (-) True G68905
TU86087 lncRNA downstream 690567 7465409 ~ 7465662 (-) True G68875
TU86086 lncRNA downstream 696340 7455978 ~ 7459889 (-) True G68874
TU86331 lncRNA upstream 67904 8226494 ~ 8250561 (-) True G69086
TU86493 lncRNA upstream 731966 8890556 ~ 8890839 (-) True G69233
TU86513 lncRNA upstream 839836 8998426 ~ 8998626 (-) True G69250
TU86641 lncRNA upstream 1191198 9349788 ~ 9355238 (-) True G69352
TU86667 lncRNA upstream 1431234 9589824 ~ 9590081 (-) True G69372
AMCG00014295 mRNA downstream 826 8148387 ~ 8155403 (-) True AMCG00014295
AMCG00014296 mRNA downstream 9221 8142189 ~ 8147008 (-) True AMCG00014296
AMCG00014297 mRNA downstream 17441 8135222 ~ 8138788 (-) False AMCG00014297
AMCG00014291 mRNA downstream 96211 8020985 ~ 8060018 (-) True AMCG00014291
AMCG00014286 mRNA downstream 373227 7752906 ~ 7783002 (-) True AMCG00014286
AMCG00014300 mRNA upstream 7652 8166242 ~ 8186240 (-) True AMCG00014300
AMCG00014301 mRNA upstream 30433 8189023 ~ 8197625 (-) True AMCG00014301
AMCG00014302 mRNA upstream 101137 8259727 ~ 8260980 (-) True AMCG00014302
AMCG00014303 mRNA upstream 145941 8304531 ~ 8305181 (-) True AMCG00014303
AMCG00014305 mRNA upstream 163844 8322434 ~ 8326420 (-) True AMCG00014305
TU86293 other downstream 17103 8137331 ~ 8139126 (-) False AMCG00014297
TU86071 other downstream 732938 7417598 ~ 7423291 (-) False AMCG00014278
TU86038 other downstream 775449 7378088 ~ 7380780 (-) True AMCG00014271
TU85055 other downstream 5327085 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 5512322 2641059 ~ 2643907 (-) False AMCG00014144
TU86412 other upstream 224695 8383285 ~ 8384224 (-) True G69156
TU86630 other upstream 1151861 9310451 ~ 9317167 (-) True AMCG00014328
TU86854 other upstream 2638126 10796716 ~ 10798147 (-) True G69537
TU87063 other upstream 3501431 11660021 ~ 11662493 (-) False AMCG00014374
TU90285 other upstream 20171149 28329739 ~ 28332482 (-) True G72236

Expression Profile