RNA id: AMCG00014299


Basic Information

Item Value
RNA id AMCG00014299
length 6640
RNA type mRNA
GC content 0.49
exon number 16
gene id AMCG00014299
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8204822 ~ 8250935 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTACACTACACTGCTGCATGCGGATAGACACATCAAAGGGGGCAGTGCAACCTGAAGCCGCAGCACGTCGCCCAAAAATGGTGCAGTGCCCCTTTAAAAGGCGGGGCCGCCGGTTCCTCCTGTGGGCGGGGGGTTCTAGGTCTGTAGACTGGGTTCCTGGTCCTACGCAGTTCCTCAGACGGTGGAGGCACAGTCCGCCGCGACCAGCATCCTGCACCATGGACCTTGCGGACCAGCCGCCGCAGAGGAGAGGCTCTCCCCCCCACGGGAAGACCCTGTGGCCCGTCCTCGTCTTCCTCGTCGCTCAGCTGGGCGAGATGAGCGCCGAGGACAGCGGCATGGAGGAGCTGGCCACCGAGAAGGAGGCGGAGGAGAGCCATCGGCAGGACAGCGTGAATCTCCTGACGTTCATCCTGCTGCTGACATTGACCATTCTGACCATCTGGCTTTTTAAGCACCGGAGAGTGCGCTTTCTCCATGAGACCGGCCTGGCGATGATCTATGgcCTGCTGGTGGGTGTTATCTTGCGCTATGGCATTCCCTCCACCAGCTATCACCATAAGACCCCCCCCAGCTGCTCCCTGCAGGACCGGCCTGTCAGCACGCTGCTGCTCAACATCAGCGGGAAGTTCTTCGAGTACACGCTGAAGGGCGAGATCAACTCCAGGGAGATCCACAACGTGGAGCAGAATGACATGCTGCGCAAGGTCACTTTTGATCCAGAAGTCTTCTTCAATATTTTACTGCCTCCAATTATTTTCCATGCTGGATACAGCTTGAAAAAGAGACATTTTTTCAGAAACCTGGGTTCAATCATCACGTATGCATTCCTAGGAACGGCGCTCTCGTGTTTTGTAATTGGCAATCTGATGTACGGTGTGGTGAAGCTGATGCAGGCGGTCGGGCAGCTGACGGACAAGTTCTACTACACAGACTGCCTCTTCTTTGGAGCCATCATCTCCGCCACTGATCCAGtgactgtgctggccatcTTCAATGAGCTGCACGCCGATGTGGACCTGTACGCACTCCTGTTTGGGGAGAGTGTCCTGAATGACGCGGTGGCCATCGTGCTCTCGTCGTCCATCGTGGCGTACCAGCCCACCGGCGGGAACACTCATGCCTTCGACGCCGCCGCCTTCTTCAAATCGGTGGGCATCTTCCTGGGCATCTTCAGTGGCTCCTTCGCCATGGGTGCCGTCACTGGAGTGGTCACCGCTCTCATATCTTTTTCTGTGACCcctccccaccacacacacTTCACCAAGCTGCACTGCTTCCCCCTGCTGGAGACAGCGCTGTTCTTCCTCATGTCCTGGAGCACCTTCCTCCTGGCCGAGGCCTGCGGGTTCACAGGTGTGGTGGCTGTGCTCTTCTGTGGAATCACTCAGGCCCATTACACGTACAACAACCTGTCTGACGAATCGACAAAAAGGACTAAGCAGcTCTTTGAGGTTCTGCACTTCCTGGCTGAAAACTTCATCTTCTCCTACATGGGTCTGGCTCTGTTCACCTTCCAGAACCACATCTTCAGCCCCATCTTCATAATTGCAATCTTCATAGGAAGAGCCTGCAACATCTACCCCCTGTCCTTCCTGCTGAACCTGGGCAGGCGACACAAGATTGGCTGGAACTTCCAGCACATGATGATGTTTGCAGGCCTGAGGGGAGCCATGGCGTTCGCGCTGGCCATCCGCGACACGGCCACCTACGCCCGGCAGATGATGTTCACCACCACCCTGCTCATCGTCTTCTTCACGGTCTGGGTGTTTGGAGGGGGCACCACTCCCATGCTGTCATGGCTGCACATCAGAGTTGGTGTGGACCCCGATCAGGACCCCCAGCCCAGCAGTGACAGTTTCCAGGTGCTCCAAGGAGACGGGATTCAGCCCGAAGGAACGAGCAAGACCAAGCAAGAGAGCGCCTGGCTCTTCAGACTGTGGTACAGCTTTGATCACAACTACTTGAAGCCGATCCTGACGCACAGTGGACCTCCGCTCACCACAACGCTCCCAGGATGCTGTGGGCCCCTGGCTCGCTGCCTGACCAGCCCACAGGCCTATGACAATCGGGAGCAGCTGAGGGACACCGACTCGGACCTCATCCTCAACGACGGTGACCTCACTCTGACCTACGGTGACACAGCCATCACTGCCAACGGGGCGTCGGGCAGCCACGGCCCCGCGGGAGCCTCCGGGCTGGGGATCAACGGCAAGAGGAGCAGCAGCACGTCAGAGGAGGCGCTGGAGCGCGAGCTGGAGGCCGGGGAGCACGAGCTGATCAGCCGGGGGACTCGCCTGGTGTTCCCCATCGAGGACCACGCCTGACCGCCCGCCCGCCTGCCCGCCATCCCCGCGGCCCAGGACACAGGCAGGGGGCTGGATTGAGACCCTTCTTGCCCCTGGAGAAACTCGGGCCATGTAGGCCGGCCATAGCTGATCATCCAATCGTAGCTCTTTAAGGAGCaagggacagaaaaaaaaaaaaaaacaattctgcgGCATTTCATTCTCATCAAGTACGGACTGGAGGAAATGCGGCTTTGCTCGTGTCGGCAACCTTTATTCACGATGAGATCATGTGCTGTATGCAGTatagatgttatttttattatttgtatgtcgtctttttttttttttaaatgcttgagCGAGGGaaaggagagggaaaaaaaaaaaaaaaaaggaaactttcCCAGAGGATGTATTTGAAAACTTTACAACCTCCTGGGAAATGAGTTCAGCACACGATTGCTGTACCTCTTTTGAGAGGTGGTCCTAGAATCGAAAGGGGAGGAGCTTAACCAAGCTAGAATTGATCACTTTCCATCCTAAGACAAAGGTCGTCAGTCGGGCGCTTTAAATGCCTGAGCCAGGGGTAGGTCTGTGAAGCCAATCAACTGTCCTAATCGAGTCACATTGCTGCTAAGAGACTCAGCCCTGGAAGATGGGCCAAAAGGTCGCCAGGCCTCTGCTAACGTGTGAGCCATAGTTCATCCCCGCTAGCCCACCAGAAGACCCCAGTAAGCATGAAACTAAATGATTTTAATGTAAACCAccctctttgttttgttttacaagtGCAGTGGCTATCAAAGCATCACATACACATATAGACTGTTCTAGAGTCAACGATGTCCATTAATCGTGGGTTACATGTTTTTAAGGATCACAGATTACATCTCGTGGAGCTTAATGCTTCTGCTCTAGGTTCGAGGAAAGTTGAAACAGAAGCAGCTCTGATTGGTCTCGCTATACAATCCACTTCTGTGTCAGAGCATAATTTCAACGTGGGCCTTCTTGAGCATCACTAAAGTGGCAGTGCTTTATTGTGAGTAGCCATGAGATGACGAAAGGGGGACGGGATGCATTTTAGGCGATTTTAGGCGATCATGTAGGCTTGCTAATGGGAACAGATGAATACAATATGTAATACTTCTACATCTCCACTCTCTTATTCACCACTGTGTGAAGCGACTGGAGTTGAATTGCCATTTCAATGCATTATTTCTGGGACCGGAGCAATGCTCCTACACCTCGGATGGATCCATTTTTATAAATTTATTACTAATTTTTAGTCCATCCCGCACACTTAGCCAGCTATTACCGACCACTTCAGCGGTTTAGTATCGTATTCACACTTCATTCTCATTAACCTGATGTAAATGTGCTGTCCATTGCAGCACTGAGAGACTGTGTCTGCGCCCTTCCTACCTTGTTCGGCATTTTGTATTGAAACCATACCCACTGGTGCCAAGACTCGCCAATGTCTGCCATACACCTGAGACTAGCTATACACAGAGGGTCCCAGAGAAAAGTGGGCTGCACTTTAGTTGGTCACTTCTCCCAACAAGACCAAGTGAAGCAATACGAAAGCTGTTGGTTGGAATAATGTACTGGGTTGCAATGAAGGTTCAGTGGACAGCACTGTGTTGACTAACAGGCCAGAGGGGAGGCTGCAGGAAGCCATTAGATGTGCTGTATCGGCAGCATAGTGTTACTTTAGTTGAGAAAGATATCAGTTCTTGAAACgtccaaaaaataataatgtaattgaaatgcTTCACTGTAGTTAAATCTGTGTGACTCGactgctgtgtgtttctggTTCGGTGTCGAGCCATTTTCTGATGGTCTCTGTGAAAGGATACTGTGACTTCCCATTCGGCAGAGGGTATAAGGCCAAATGTCCAAATTGACTGAATTTTTCTACTTCTGCTAATTTTGCGCAATAATGTTTTCCCACAGTTGTAAAGCTGTCACTCAGTTTAAAGTCTTTAGTTGCATCTTGGAGCTGCAGTGCAACTCGTAGCACTGCAGCGGGTTAGTGAAAATGTTCTCTGCAGGAGATAAAGTCTGAAGCACTTTAACTGCGGTTGAGCTGCAGTCATTATGCCGACGAACAAAAGGCTGTCCTGTCTGGTTGAAAATGCATTGCTTACTAATTGCAGAGAATCCCGAGTGGGTTCTGAATTTAATCGTGAATAACAAATGAAGTaatcacattgtttaaatgCGTCTCGAGTAATTATTACTAGGAAGTGAAGTGtgtactgtttgtttgtgttgttatatAAGTGTAAATGTGACATGTATACAGTGGGCTCCAAATACTGTCATCATTGATATCTGAAACTCAAGCTTGCGAATGAGTGGGATGTGTGTTGGATTGTGTCTGGGGTCCCCAGTCCTGGTCCAGCAGGCATTCAGATCTCTATCAGAGCTGCTAAGAGAGGTTGCTTTGGTTCTGGAAAGGCAATAAACAGTTGAATTGGGTACTAAGGGGCTCAGGTGGATATAAAATCATGGCTGCCCTCCAAGACTGGGGACCCCAGCTTTaaatttctgctttttaaatgtgatttgttgAGGACCTTGATCTTAAAGTCTTTCGCAGAAAGGAGCGTTTAGTGTGTATTACTCTAAAATTACAGGGTTATTCTGAAAGCAGTACAGCATTTCACACACGTACTGTGATCAAACTACATATTCCCGATGCACAAATAATCATCAATGGAAACTGTAACTCGCAAAGATGTTACAGCCTGGCAACTATTTGTAGATCAGGAATGTATAGTTGGATCACAATACATTCTTGAAGTGATATACTTGTATAATAAGCCTGTACAGGAGTTTGGATCCGAGTGGGTTCTGGCCACGTGGATTACTAAAAATCATTTGGGATCGAAAGCTAGACATGACATTTCAAAAGGGTCTTGGTCTGAGAGTGTATTTAtgctaaataattcaatattgtaATGTAACGTAATCGTACATCTCCCTAAATGATTAATGCCATCCTTCCTAAAACATGCTTTATCTGGATCCCATATTTTCTTTGGAGCCCACTCTATAGACCttctaattaattattgaaatgcGTCTCAAAGACCCATCTGTGACTGACTATACACTTCATGGAAGCACAGCCACTGTCTTTTACTGGAAATATTCGGCTTCACTTTGTTGCCCTGCGGTACAGCCTTTCTGTGTTTCCAAACTCTTGTGGTCTTCTCTGTTTTTGAATCGGAGGAGAAATATAGCCAACAAATGATGTGTGTAAATTCTGTTTCCAGTTACTGCAAAGGGAAGTGGGGTGGTAatctgtgcatttgtctttttgtaAAGTTGTTTGTTTTCGGGAAGACACTGAGCCGCTTCTTTTTTCATCGAAATCTTGAGGAAATCTGACCATTCTTTCTATTCTACAAACGTCTCTTTTGATATGGATTGTGGGTCGAGTTGACGCCCCTTTCAGCCTGGAAGTATGACTGGAGATTGTGCAATCATGAATGTAGCAGCCTTTAGATTTTCTCTGCTGTTTGACTGGCCGTGCGACATCGAGGTGGGACGCTTGCCCACCAGTGACCAATCGGCGGAATCGCACTTCTCCGTGCTGCGTGTCCACGGCCGCTTCTTCGTGTAATGTACGTCCTCCGGGGACATCCCTCCTCCTGCCTGACTCTCATTCAGACCCCTAGAAAAACCTTGCAACTGTTTCATTTGAGATGTTCTGCATGTGATATCTGTCAATAAAATCTGTCCTGCAGGctggtattttttttactgtacaaaGGTTTCCTACATCAGCCTTCTTCATGCGGTTTTCCTGTGTCTTATCCTCATGATCGTTTGAAAGGCCCGGTCGGCTGGGGGTTGGTGCTGTCACCCTTAGCCAACATTGCGGCTACTGTAGAGCACTAGAATGTGAACAGAGGTTTGGTGAGGGCTTGTGTAACGGGGATTGTCATGTATGTGAGCCTGTTTCAGTGACATCACCCCCTTGGGATGTTGAGGGGGTATTGCAGGCTTGTGTTTCTTGTCTGGGCTGTGTGGCTATAACAGAATTGGGAATGTGGGTTTTTAATCTCAAAGGCTACAGCTGTGTGATCTGTAGCCCTGTGAGCTCAGATACTGAGTAGACCTGTGCAACACACAACCCTTAGACATCCGCTGAGCTGGTCTTCTGTTCTGCAACTTAAGTGCATCTATTTTCACcattttgcatatttcaaaATCCTCATTGTCCACATAACTGATGGTGTAAGTCAATTTCCTAGAGGCAACTTCTTCAAGAAATTGCTCTTCCATTTTCCCTTCCATAAGCTTTTCATCCAAAGTTCTTAAGTgcattaagtat

Function

GO:

id name namespace
GO:0006885 regulation of pH biological_process
GO:0055085 transmembrane transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015385 sodium molecular_function

KEGG:

id description
K12041 SLC9A6_7, NHE6_7; solute carrier family 9 (sodium/hydrogen exchanger), member 6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86247 lncRNA upstream 68612 8133288 ~ 8136210 (+) True G69023
TU86229 lncRNA upstream 189819 8014744 ~ 8015003 (+) True G69006
TU86203 lncRNA upstream 330080 7874527 ~ 7874742 (+) True G68982
TU86116 lncRNA upstream 578418 7625988 ~ 7626404 (+) True G68904
TU86061 lncRNA upstream 735512 7469078 ~ 7469310 (+) False AMCG00014272
TU86463 lncRNA downstream 483388 8734323 ~ 8735939 (+) True G69206
TU86492 lncRNA downstream 639651 8890586 ~ 8890834 (+) True G69232
TU86614 lncRNA downstream 1115602 9366537 ~ 9376350 (+) True G69326
TU86679 lncRNA downstream 1650515 9901450 ~ 9910048 (+) True G69384
TU86698 lncRNA downstream 1723489 9974424 ~ 10028351 (+) True G69400
AMCG00014293 mRNA upstream 43542 8160408 ~ 8161280 (+) True AMCG00014293
AMCG00014294 mRNA upstream 73029 8128204 ~ 8131793 (+) True AMCG00014294
AMCG00014292 mRNA upstream 77727 8120375 ~ 8127095 (+) True AMCG00014292
AMCG00014290 mRNA upstream 201544 8000090 ~ 8003278 (+) True AMCG00014290
AMCG00014289 mRNA upstream 349471 7845556 ~ 7855351 (+) True AMCG00014289
AMCG00014306 mRNA downstream 12501 8263436 ~ 8321739 (+) True AMCG00014306
AMCG00014307 mRNA downstream 92066 8343001 ~ 8382284 (+) True AMCG00014307
AMCG00014308 mRNA downstream 135230 8386165 ~ 8401359 (+) True AMCG00014308
AMCG00014309 mRNA downstream 228047 8478982 ~ 8507687 (+) True AMCG00014309
AMCG00014314 mRNA downstream 544293 8795228 ~ 8824532 (+) True AMCG00014314
TU86046 other upstream 788228 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 855355 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 3552858 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 3552858 4649200 ~ 4651964 (+) False G68475
TU84898 other upstream 5494493 2709024 ~ 2710329 (+) True AMCG00014146
TU86705 other downstream 1752123 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 6085923 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 7424696 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 7424696 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 7878590 16129525 ~ 16132802 (+) False AMCG00014508

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00004174 True 3712 mRNA 0.42 16 NC_007121.7 26571193 ~ 26597800 (+)