RNA id: AMCG00014301


Basic Information

Item Value
RNA id AMCG00014301
length 2463
RNA type mRNA
GC content 0.42
exon number 5
gene id AMCG00014301
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8189023 ~ 8197625 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagagagtatctGAGCATAGGTAGACCGCAGCTGGGCATTATTGTACCCGTGACGAGGCACGACAGGCGGTGAAAATGGGATGCTTCTTTTCGAAGAAATCGAGAAGAAAACCGGAGAAGGAGGAGACCCCCGGGGGACAGACCGACGCCGAGGAGGCCCCCAAGCAGTACAGCTGGGACACCCGGGAGAAGGTTGATCCCAAGGACTATATGCTGACTGGTATTAAGGATGAAACGGTAGGCCGTTTACCTGGCAAACTGAACGGCCAACAGTTTGTCATTCAAGACTGTGAGAACTGCAACATCTACATCCTGGACCACTCGGCCACCATCACCATCGATGACTGCACGAACTGCAGGATAGTGCTGGGGCCCGTCAAGGGCAGCGTGTTCTTCCGGGACTGCAAGGACTGCAAGTGCGTGGTGGCGTGCCAGCAGTTCCGCACCCGGGACTGCAAGAAGATGGAGGTGTTCTTGTGCTGCGCCACCCAGCCCATCATCGAGTCCTCCACCGGCATGAAGTTCGGCTGCTTCCAGTACTACTACCCTGACCTTGCCTTCCATTTCAAGGATGCCGGCTTGAGCATCTTCAACAACAACTGGAGCAACGTTCATGACTTTACCCCTGTGTCGGGGGAGACCAACTGGAGCCTGCTGCCCGAGGACGCCGCGGTGCTGGACTACGTGCCACTGCCCGACTCGGACGAGTTCAAGTCGGTCAGGGTCTCCACAGACTCTGGCAGGAGCATCATCCCCGTCACCTGGGGCCAGCGGCGCAAGGAGAGCGACGAGTCCTGCCTGTTCGTGTTTTTCGCCGGGGATTACACGACTGCCAATGCCAGGAAGCTCATCGATGAGGTGGTGGGAAAGGGCTTTGTGCTGGTCCAAACAAAGGAGGTGTCCATGCGCCCAGAAGATGCCAGTAGAGTATTTCAGCAGAATGTGGAAGATTTCACCGATTTGATCACAAAAGGTCCAGTTGTGGCTTTGGAGCTGAATGGAGACGGGGTTGTAGAGACCTGCCGTAACATTGCAAATGAAGTGTTTAGCAGCTCCAAGGTGtttgtttcagaaaacaaaactacgTCTTCAAGAGATGTGGACAATTTCTTCAACTTTGCAGATATGCAAATGGGAATATGAAGTCCTTTAAGACTGAAGAAAGtcactagtttttttttctttagcgTGTATGACCTTTTCTAAAACTGTCAgtattgtgatttttaacactttaaagaTATAACACTTTCTATCTTGCTAACCGaacatgattgttttttaaaagggaaTAAACAaagtttcacaaaatgtaattttttttatttttttttttatatatatatatatattggctgTATATATTAGCCATGCAACCAGAAAATCTATCCTCTTATGAATGTATATTATAGacattgtttttggttgttttgcatCCACTTTTATTTCCGTTTTGATTCCCATACTGCTTTACTATAGTTGGGCCAAATTAGGACATTCCTCTCTATGGGGAACAAATTTAGTTTAACACTCCTGTAcaataagaataacaaaaatggTAATGCATAACTTATTGTACGTAATTTACTTAGTTGACAATcgtgaaatgttttttttcctgtgtcagCCTAATTGGTTTCTGCAGCTATTTATTGTTGTCAAATAcgtgtcattgtttttgttattttggtgGTTAGGAATGAAGACAAATGGAACCCTtaagtttttatgtattttatgtctcCCCTCCATATGTTGATTTCATTACTTAATACAGCAATGcttgtataattatattaatgtatatttgtgtaaaaCTTCGAAATCTTTTAGAAAAACTGTTACATTGGACAACTGCAGGCTGTTTAGGGCTTTGTTTTATGTTCACcttccaagttttttttttttttaaccacgcTCTTCGGTAGGCATcgctctactgggtggagcgGAGGAGGAGTGCGGATCAAATCCCAAGCATGGGCTAAGTTTGCTTTCCATTATCTTCCTTCCCAGTCTGTAAATTCTGACCTTCAATTCTCCAGTGACAGTTATTTGTGCCCTGTGTTAAACGAGGGACACACAATGTTACactaatatgtaaaatatttaatgtatgtctatttgaaattaatgtctTGTATCCACCTCAAAAAAGCCTAATTTTGTTCCCCCATCAGTTTTATTATCTAGTGAAGTGCTTTTGAATTAAAGAAAGTGTGAAGcgttttaattttacatttttatggcAGATCAAAGAAAATGCTTTCAGCTCCCATTGTGACCAAGTACAGAAGTATGTATTTGTaagcttgtttaaaaaaatatgggtttttgtaaagtaaaatgttgcatattttattttgtagtactGAATGTATGCGATTAACAATAAAACTTTATGAATTGGTACTTTGCTTAATCTTTgttagtaaattaataaaaaaaaaatctgtcgaATTT

Function

GO:

id name namespace
GO:0000902 cell morphogenesis biological_process
GO:0048793 pronephros development biological_process
GO:0035845 photoreceptor cell outer segment organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0006183 GTP biosynthetic process biological_process
GO:0006228 UTP biosynthetic process biological_process
GO:0006241 CTP biosynthetic process biological_process
GO:0010842 retina layer formation biological_process
GO:0001947 heart looping biological_process
GO:0005524 ATP binding molecular_function
GO:0004550 nucleoside diphosphate kinase activity molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K18272 RP2; protein XRP2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86291 lncRNA downstream 52829 8134903 ~ 8136194 (-) True AMCG00014297
TU86202 lncRNA downstream 314665 7874153 ~ 7874358 (-) True G68981
TU86117 lncRNA downstream 562648 7625985 ~ 7626375 (-) True G68905
TU86087 lncRNA downstream 723361 7465409 ~ 7465662 (-) True G68875
TU86086 lncRNA downstream 729134 7455978 ~ 7459889 (-) True G68874
TU86331 lncRNA upstream 28869 8226494 ~ 8250561 (-) True G69086
TU86493 lncRNA upstream 692931 8890556 ~ 8890839 (-) True G69233
TU86513 lncRNA upstream 800801 8998426 ~ 8998626 (-) True G69250
TU86641 lncRNA upstream 1152163 9349788 ~ 9355238 (-) True G69352
TU86667 lncRNA upstream 1392199 9589824 ~ 9590081 (-) True G69372
AMCG00014300 mRNA downstream 2783 8166242 ~ 8186240 (-) True AMCG00014300
AMCG00014298 mRNA downstream 30535 8155932 ~ 8158488 (-) False AMCG00014298
AMCG00014295 mRNA downstream 33620 8148387 ~ 8155403 (-) True AMCG00014295
AMCG00014296 mRNA downstream 42015 8142189 ~ 8147008 (-) True AMCG00014296
AMCG00014297 mRNA downstream 50235 8135222 ~ 8138788 (-) False AMCG00014297
AMCG00014302 mRNA upstream 62102 8259727 ~ 8260980 (-) True AMCG00014302
AMCG00014303 mRNA upstream 106906 8304531 ~ 8305181 (-) True AMCG00014303
AMCG00014305 mRNA upstream 124809 8322434 ~ 8326420 (-) True AMCG00014305
AMCG00014304 mRNA upstream 132431 8330056 ~ 8334452 (-) True AMCG00014304
AMCG00014312 mRNA upstream 339312 8536937 ~ 8539049 (-) True AMCG00014312
TU86302 other downstream 30433 8156229 ~ 8158590 (-) True AMCG00014298
TU86293 other downstream 49897 8137331 ~ 8139126 (-) False AMCG00014297
TU86071 other downstream 765732 7417598 ~ 7423291 (-) False AMCG00014278
TU86038 other downstream 808243 7378088 ~ 7380780 (-) True AMCG00014271
TU85055 other downstream 5359879 2825562 ~ 2829144 (-) True G68088
TU86412 other upstream 185660 8383285 ~ 8384224 (-) True G69156
TU86630 other upstream 1112826 9310451 ~ 9317167 (-) True AMCG00014328
TU86854 other upstream 2599091 10796716 ~ 10798147 (-) True G69537
TU87063 other upstream 3462396 11660021 ~ 11662493 (-) False AMCG00014374
TU90285 other upstream 20132114 28329739 ~ 28332482 (-) True G72236

Expression Profile