RNA id: AMCG00014302


Basic Information

Item Value
RNA id AMCG00014302
length 1254
RNA type mRNA
GC content 0.55
exon number 1
gene id AMCG00014302
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8259727 ~ 8260980 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGAGACGGATGCAGAAGAGATACTTGATTTTAATCATAGGCTACTCCGTGCTGCTCCTGTTCATTCCCTACATGCTGGATTACAAGACCAAAACGGGTCAGGTCAAATATGGACCTCAGCAGCAGAGGTGCCCTGATCTGGAGAGCTCTATGGAATTGTGGAGCACTGTGGACAAGGCGAGCAATGAGACTGAAGTCGTGGAGGAGATGGGCACTAGGAACCGCACCAAAACGCACATTTATTTGCACGCAACGTGGAGGACTGGCTCGTCGTTTCTGGGGGAGTTATTCAACCAGCACCCTGATGTGTTTTACCTGTACGAGCCCATGTGGACTATGTGGCAGGCTCTGTACCCGGGAGATGCGGGCAGCCTGCAGGGAGCCGTGCGGGACATGATGAACTCCCTGTTCCGCTGCGACTTCTCCGTGCTGAAACTGTACGCCGGCACTAAAAACATCAGCACCTCGTTCATCTTCGGCTGGAAGACCAACAAGGTTATCTGCTCTGAACCGTTATGCCCAGCCTATAAGAGGGACCAGATCGGGCTCATCAGGGGAGACGTCTGTGAGAAGTGCCCTGCCAGGGACATCAGGGATTTGGAGAGGGAGTGCAAGAAGTACCCGGTGGTTGTCATCAAAGACGTTCGGGTCCTAGACCTGGGCATCCTGGTCCCCTTGATCCGAGACCCCGGGCTGAACCTGCAAATCATCCAACTGTTCAGGGACCCCCGAGCGGTGCACAACTCCAGGTTGAAGTCCAAACAGGCGCTGGTCAAGGAGAGCATCCAAGTGCTGAGGAGCAAGAAACAGACGGACAAATTCAAGCGCCTCCTGGTGCCCAGCAGGTCCAACCGGGCGGAGAACTATGTGTCCAGCGCCATGGAGCTCATCTGCGACAACTGGCTCGGTGACATGCTGATCATCAGAAACGCGCCCCAGTGGGTGAAGAGGAATTACATCCAGCTGCGCTACGAAGACCTCGTCATGCGTCCCGTCCAGGAGCTCCAGAGGATGTTCCGCTTCTCCAACCTCGGCTCCTTTGCAGCCATGGACAAGTTTGTGTTGAACATGACCCACGGCGAGGGCTACTCCTCAGACAAGCCGTTTTTGATATCTTCCAGGAATGCCAAGGAGGCCATCCACGCTTGGAGGGAGAGGCTGAGTGTGGAGCAGATCAGCCAGGTGGAAACGTACTGCAGCGAGGTCATGCGCCGGCTGGGCTACCAGAAGACCAATGTGGATAAAACGTAG

Function

GO: NA

KEGG:

id description
K04743 CHST7; chondroitin 6-sulfotransferase 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86331 lncRNA downstream 9166 8226494 ~ 8250561 (-) True G69086
TU86291 lncRNA downstream 123533 8134903 ~ 8136194 (-) True AMCG00014297
TU86202 lncRNA downstream 385369 7874153 ~ 7874358 (-) True G68981
TU86117 lncRNA downstream 633352 7625985 ~ 7626375 (-) True G68905
TU86087 lncRNA downstream 794065 7465409 ~ 7465662 (-) True G68875
TU86493 lncRNA upstream 629576 8890556 ~ 8890839 (-) True G69233
TU86513 lncRNA upstream 737446 8998426 ~ 8998626 (-) True G69250
TU86641 lncRNA upstream 1088808 9349788 ~ 9355238 (-) True G69352
TU86667 lncRNA upstream 1328844 9589824 ~ 9590081 (-) True G69372
TU86668 lncRNA upstream 1330196 9591176 ~ 9591381 (-) True G69373
AMCG00014301 mRNA downstream 62102 8189023 ~ 8197625 (-) True AMCG00014301
AMCG00014300 mRNA downstream 73487 8166242 ~ 8186240 (-) True AMCG00014300
AMCG00014298 mRNA downstream 101239 8155932 ~ 8158488 (-) False AMCG00014298
AMCG00014295 mRNA downstream 104324 8148387 ~ 8155403 (-) True AMCG00014295
AMCG00014296 mRNA downstream 112719 8142189 ~ 8147008 (-) True AMCG00014296
AMCG00014303 mRNA upstream 43551 8304531 ~ 8305181 (-) True AMCG00014303
AMCG00014305 mRNA upstream 61454 8322434 ~ 8326420 (-) True AMCG00014305
AMCG00014304 mRNA upstream 69076 8330056 ~ 8334452 (-) True AMCG00014304
AMCG00014312 mRNA upstream 275957 8536937 ~ 8539049 (-) True AMCG00014312
AMCG00014310 mRNA upstream 340182 8601162 ~ 8615001 (-) True AMCG00014310
TU86302 other downstream 101137 8156229 ~ 8158590 (-) True AMCG00014298
TU86293 other downstream 120601 8137331 ~ 8139126 (-) False AMCG00014297
TU86071 other downstream 836436 7417598 ~ 7423291 (-) False AMCG00014278
TU86038 other downstream 878947 7378088 ~ 7380780 (-) True AMCG00014271
TU85055 other downstream 5430583 2825562 ~ 2829144 (-) True G68088
TU86412 other upstream 122305 8383285 ~ 8384224 (-) True G69156
TU86630 other upstream 1049471 9310451 ~ 9317167 (-) True AMCG00014328
TU86854 other upstream 2535736 10796716 ~ 10798147 (-) True G69537
TU87063 other upstream 3399041 11660021 ~ 11662493 (-) False AMCG00014374
TU90285 other upstream 20068759 28329739 ~ 28332482 (-) True G72236

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00064122 True 2825 mRNA 0.47 2 NC_007117.7 37603968 ~ 37622576 (-)