RNA id: AMCG00014304


Basic Information

Item Value
RNA id AMCG00014304
length 2495
RNA type mRNA
GC content 0.43
exon number 5
gene id AMCG00014304
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8330056 ~ 8334452 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCTTCCGCATCACCAATGTGCAGAAGTGTCCCTCTTGTCGTGTCTGATGTTATTGAAATGAATTGAACATTTATGTCAAGTAAACTAACAGACAATGTTTTAGATCGTTAGGTATCTTTCTAACACTTCAGTTCGTTGGGTTGTTTGCGGAAGGCATGATGTTACATTAAGGCTGTTATGCCACAAgacaagttttaaaatgactttagaGCTGAAAGAAAGTCCGTTGCTGTGTATTGGTATAGGTATAGCGGTGGTGTCCAGTTTAATCAATGGATCGACGTTTGTGTTGCAGAGAAAAGGCATTTTACAGGCTCGGAAGAGAGGTGCCTCATATTTGACTGAATACATGTGGTGGAGTGGGACTCTCTCCATGATCCTGGGTCAGATAGGGAATTTCTTGGCATATAATGCAGCTCCTGCTGTCTTGGTTACGCCACTTGGAGCTCTTGGTGTGCCTTTTGGGTCTCTCTTGGCTTCCTATATACTGCAGGAAAACCTTAATCTTCTGGGAAAGCTGGGGTGCTTGTTAAGCTGTATAGGCTCTGTGGTGTTAATTATTCACGCCCCAAAGTCAGACCATGTGACCTCCAGGGCAGAGCTCGAGGAAAAGCTGGGAGATCCAGTGTTCTTGTCCTACCTCTTGGTGGTTCTCCTGCTGCTCCTCGTGCTGATCTTCTGGCTGGCCCCGGCCTACGGAGCCTCCAACATCATGGTCTACATCAGCATCTGCTCCCTGCTGGGCAGTTTCACCGTGCCAAGCAGCAAGGGCCTGGGACTGGTGGTGCAGGACGTGTTTGGCGGGGGCTCCTCCAGCAGCAGAGCGCTGTACCTGTTCCTGGGGCTGCTGGCGACCCTGGGAGTCAGTGTCCTCCTGCAGTTCACCTTCATCAACAGAGCCCTGGAGCGCTTCGACTCCAACACGTTCGCCGCCATTTACTACGTGACCTTCACCAGCACGGTCATCCTGGCCTCGGCCGTCCTGTTCCGGGAGTGGGGGATGGTGGGCGCCGTGGACGGCCTGGGCATGCTGTGTGGGTTCACCACCGTGGCTGTGGGCGTCTTCCTCCTGCAGGTCTTCCAGGATGCCAGCCTCAATGGGAAAGGCGTGAAAGCCCCAATCAAGGAAGACTAGGTCTTCATCCTAGCAATCCTCTCCTTGATGATTCATATGAAAATGGGACACTTGACAATTCTAAATGTGGGAAGTTTACTGCAGATcctaaaatgcatttgttagaatgtatttcaccctttatttatttttaatgaacctCAATCGTGCGTGAgggtgtgtttaaaataaattacagattcTAGTTGCTAAAGCGTaagctgtaaattaaaaaacagatgaaTTCCCACGCATATAATGATCTGGCCAATGTGCCTCCATGCCCAGATGAACGCATAGACGCTGGGTTTGGTTGTTGCCACTCTCTGTCATACTAGAACGCCTTGTCGGAATTTCACCTGTACTTTCTGCAGCCTAGTTCTACTGCAGGACAGGCTCTGTTTATTCTCTGCTGTGGCCAGCGTCGAAGCTTCCTTTCACTCACTAATCCCAGTAAGCAAATATAGGCAAATAATGCTGTTTAGCTGAGCTTCACACAGCTGAGAATGGGAACAGCTTAAGCTTGTATGGTGCAATATTAATcctggttatttattttaagatgttttccagctttaaaaaaaaacattgaattgaaATAATGCCAGAAGTTAGAGGGTTGGGCTGCTTAAATAGTCTGCCAAGCCTGTATGTTTCGCCTTCATTTACCTCGAGGAACTCAAAGCAAAAACTCAGGTACTTCGGTAATTTTTACATCTGCTGTAATGGTTCATATGCCTAAGGGCAGTTAGAGAACACGGATATATGCTTATCAGTTGTGTGACTGCAGCACAATACaggaataatttatttagttttcataaAGATGTATGTCTGgattgatattttaatgtatttaataagatCAAAGGTTACTTACATGTacttattgtaaaataaaataaactctgttcttctttgttttctaataaaataCTACTGAATGGATAAAATCTGTATAATCATCCAATATTGACTGTATTCAAAGGCTAACCCAGTTGATAAGGCAACATGTGACTGCTGGTATAGCTACGTTAGTATGTCTGttgacatttatatataatgaagttgttttgcattttggtgCTTGAATACACACTTTGCATCAGCTGACACTTGTGTGCTTTTAGAAACAATTATTCtaaaaacatgtacaatgaTTTGCTGATTCCAGATTCTTTTGCTTGATGACAGGAGCAAGTGAATTTCTAtttagagagaaaaataagacgtttgagatttcagtttttttcaatttacagGACAGCTGATAGCATTCACACTTGAAGTTTGTTGTTTACATTGCAAAAGGCAAAACAGCAAGGCATtattaacacacatttttatagatGTATAACAAGCATTTAACCAATTACTAAA

Function

GO: NA

KEGG:

id description
K19364 NIPA1, SLC57A1; magnesium transporter NIPA1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86331 lncRNA downstream 79495 8226494 ~ 8250561 (-) True G69086
TU86291 lncRNA downstream 193862 8134903 ~ 8136194 (-) True AMCG00014297
TU86202 lncRNA downstream 455698 7874153 ~ 7874358 (-) True G68981
TU86117 lncRNA downstream 703681 7625985 ~ 7626375 (-) True G68905
TU86087 lncRNA downstream 864394 7465409 ~ 7465662 (-) True G68875
TU86493 lncRNA upstream 556104 8890556 ~ 8890839 (-) True G69233
TU86513 lncRNA upstream 663974 8998426 ~ 8998626 (-) True G69250
TU86641 lncRNA upstream 1015336 9349788 ~ 9355238 (-) True G69352
TU86667 lncRNA upstream 1255372 9589824 ~ 9590081 (-) True G69372
TU86668 lncRNA upstream 1256724 9591176 ~ 9591381 (-) True G69373
AMCG00014305 mRNA downstream 3636 8322434 ~ 8326420 (-) True AMCG00014305
AMCG00014303 mRNA downstream 24875 8304531 ~ 8305181 (-) True AMCG00014303
AMCG00014302 mRNA downstream 69076 8259727 ~ 8260980 (-) True AMCG00014302
AMCG00014301 mRNA downstream 132431 8189023 ~ 8197625 (-) True AMCG00014301
AMCG00014300 mRNA downstream 143816 8166242 ~ 8186240 (-) True AMCG00014300
AMCG00014312 mRNA upstream 202485 8536937 ~ 8539049 (-) True AMCG00014312
AMCG00014310 mRNA upstream 266710 8601162 ~ 8615001 (-) True AMCG00014310
AMCG00014311 mRNA upstream 397126 8731578 ~ 8758181 (-) True AMCG00014311
AMCG00014317 mRNA upstream 695653 9030105 ~ 9040045 (-) True AMCG00014317
AMCG00014319 mRNA upstream 712852 9047304 ~ 9050642 (-) True AMCG00014319
TU86302 other downstream 171466 8156229 ~ 8158590 (-) True AMCG00014298
TU86293 other downstream 190930 8137331 ~ 8139126 (-) False AMCG00014297
TU86071 other downstream 906765 7417598 ~ 7423291 (-) False AMCG00014278
TU86038 other downstream 949276 7378088 ~ 7380780 (-) True AMCG00014271
TU85055 other downstream 5500912 2825562 ~ 2829144 (-) True G68088
TU86412 other upstream 48833 8383285 ~ 8384224 (-) True G69156
TU86630 other upstream 975999 9310451 ~ 9317167 (-) True AMCG00014328
TU86854 other upstream 2462264 10796716 ~ 10798147 (-) True G69537
TU87063 other upstream 3325569 11660021 ~ 11662493 (-) False AMCG00014374
TU90285 other upstream 19995287 28329739 ~ 28332482 (-) True G72236

Expression Profile