RNA id: AMCG00014305


Basic Information

Item Value
RNA id AMCG00014305
length 2193
RNA type mRNA
GC content 0.45
exon number 5
gene id AMCG00014305
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8322434 ~ 8326420 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTCCTTCacagtattcatattaataatgttatgtTTTCCCTCACAGGATCTGTTGTTTGTCTGCCCTGTCCTTCAGATCAGCAACTCAACTGTCCGGTGATCAATGTAACAGATTCGAACTCCACCTCAACAATCACGATGGGCCAGGACAGGGGGAAATATGACTTCTACATTGGGCTAGTCTTAGCCATTAGCTCCAGCATTTTCATCGGAGGCAGCTTCATCCTGAAGAAAAAAGGCCTTCTGCGCTTGGCCAAAAAGGGTTCAATGAGAGCAGGCCAAGGTGGTCATGCATACCTTAAAGAGTGGCTCTGGTGGGCCGGTTTGCTATCCATGGGTGTCGGTGAAGCAGCCAATTTTGCTGCCTATGCGTTTGCTCCAGCCACACTAGTCACCCCTCTGGGAGCCTTAAGTGTTCTTGTAAGTGCCGTTCTGTCCTCGTACTTCCTGAATGAGAGGTTGAACCTGCATGGGAAGATCGGCTGTTTGCTCAGTATCCTGGGGTCCACGGTGATGGTGATTCACGCACCACAAGAGGAAGAGATTGACAGCCTGAATGAAATGGCCAAGAAACTGGTAGATCCAggTTTTGTGGTGTTCGCTACCTTTGTTGTGATAGTTGCACTGATATTCATCTTTATAGTGGGACCTCGTCATGGACAAACCAACATCCTGGTCTACATCACAATCTGCTCTGTGATCGGAGCTCTGTCTGTCTCGTGTGTAAAGGGCTTGGGCATCATCATAAAGGAACTGTTCGCAGGGAAGCCCGTCCTTAGGAACCCCTTGTCTTGGATTTTATTGCTGAGCCTCATAACTTGCGTGAGCACACAGATCAACTACCTGAACAAGGCTCTGGATATCTTCAACACCTCCCTGGTGACGCCGATCTATTACGTGTTCTTCACCACCTCGGTGCTGTCCTGCTCGGCCATCCTCTTCAAGGAGTGGCAGCACATGGGCTCGGACGACATCATCGGCACGCTCAGCGGCTTCATCACCATCATCGTGGGCATCTTCCTGCTCCACGCCTTCAAGGACGTCAACATCAGCCTGGCCAACCTGCCCGTGACGGTGAGGAAGGACGAGCGCGGCGCCCCCTCGACCAACGGGATGGCGTCCCACAGCGCGTATGAACTGTTTGAGAATGAGCAGACGCAAGAAGGCACTCTGGACTCGCCCTTTGACAGTGTGTCTCGGAGAAACGGCACTGTGGCGACCTTGTGAATCCATAGGAAAAGTAAACGGCTATTAAATGCTGTACACTGTGTCCAGGTTTGTAGCCCGCAATGGCACGAACCTTTCATTTTCACAGGTGGAAGCTTTGCATTTGgttgaaaacaaaagacaatctGTTCTTTTAAACAAAGTGTGACTTGGATGGACCAATGAATTGTATTGAAGTTTTTATTTGCCTTACCCGTCACAAAGCTTGTCTTTTGTAATTGAGTATGACTACATGGCTCCGTTTCATCACATTGCCATGTAACCTTGTAAATAGGACttcaagatgtttttaaattgccTCGTTATACTTTCTGTATAGAGATATAAACATGCACTGAGTTTATTTCTACAACTGAATCGAGGGTCGTTTCCTCATGGGTGTCCTCACACTTCACATCAAACCCAGCCGTCGTGGGAACATGTGAAATGTCCAAGAGCCACTGTAGTAGCTTTCATATTAAAGACGTTCATTACCTTTTCTCACTTTCTCGGATTTAGCACAATGTTGGATATTTACcctaatgtttaatttgaaatattggTTCACAAAATTAGTATTAAGCCTGTGCCAAAATCCAAACCTCAGTTAGCTGTGGCGTCTGGCTAAGCACTGGTTATAAGGTTATTCTTAATAagtatatatatgattttaataCCTCCagacagtttaattttaaagacGGGAATTATTTTGAAGGATAATTAAATATACTGGTTAAAAGCTTGGCAAGAATGTTAGGATGCATCTTGTACTATAGTATTGCACAATTATACCATCAATATTCAAAAACTTAGCTTTTGTTGTGGTTCCGTTTATTACCTAGCAATACTATAGTACAATATGGCACTCTTCACCGTTTAAAGAGTTTGAAGTCTGAAGGATTCGGTTTTTCCTCAGGGCATTGTAAATAATTGTTACAAGAGTTCTtcagaataaagaaaatgttcGTAAATGGTAGCGGT

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0015693 magnesium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0015095 magnesium ion transmembrane transporter activity molecular_function

KEGG:

id description
K22733 NIPA, SLC57A2S; magnesium transporter

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86331 lncRNA downstream 71873 8226494 ~ 8250561 (-) True G69086
TU86291 lncRNA downstream 186240 8134903 ~ 8136194 (-) True AMCG00014297
TU86202 lncRNA downstream 448076 7874153 ~ 7874358 (-) True G68981
TU86117 lncRNA downstream 696059 7625985 ~ 7626375 (-) True G68905
TU86087 lncRNA downstream 856772 7465409 ~ 7465662 (-) True G68875
TU86493 lncRNA upstream 564136 8890556 ~ 8890839 (-) True G69233
TU86513 lncRNA upstream 672006 8998426 ~ 8998626 (-) True G69250
TU86641 lncRNA upstream 1023368 9349788 ~ 9355238 (-) True G69352
TU86667 lncRNA upstream 1263404 9589824 ~ 9590081 (-) True G69372
TU86668 lncRNA upstream 1264756 9591176 ~ 9591381 (-) True G69373
AMCG00014303 mRNA downstream 17253 8304531 ~ 8305181 (-) True AMCG00014303
AMCG00014302 mRNA downstream 61454 8259727 ~ 8260980 (-) True AMCG00014302
AMCG00014301 mRNA downstream 124809 8189023 ~ 8197625 (-) True AMCG00014301
AMCG00014300 mRNA downstream 136194 8166242 ~ 8186240 (-) True AMCG00014300
AMCG00014298 mRNA downstream 163946 8155932 ~ 8158488 (-) False AMCG00014298
AMCG00014304 mRNA upstream 3636 8330056 ~ 8334452 (-) True AMCG00014304
AMCG00014312 mRNA upstream 210517 8536937 ~ 8539049 (-) True AMCG00014312
AMCG00014310 mRNA upstream 274742 8601162 ~ 8615001 (-) True AMCG00014310
AMCG00014311 mRNA upstream 405158 8731578 ~ 8758181 (-) True AMCG00014311
AMCG00014317 mRNA upstream 703685 9030105 ~ 9040045 (-) True AMCG00014317
TU86302 other downstream 163844 8156229 ~ 8158590 (-) True AMCG00014298
TU86293 other downstream 183308 8137331 ~ 8139126 (-) False AMCG00014297
TU86071 other downstream 899143 7417598 ~ 7423291 (-) False AMCG00014278
TU86038 other downstream 941654 7378088 ~ 7380780 (-) True AMCG00014271
TU85055 other downstream 5493290 2825562 ~ 2829144 (-) True G68088
TU86412 other upstream 56865 8383285 ~ 8384224 (-) True G69156
TU86630 other upstream 984031 9310451 ~ 9317167 (-) True AMCG00014328
TU86854 other upstream 2470296 10796716 ~ 10798147 (-) True G69537
TU87063 other upstream 3333601 11660021 ~ 11662493 (-) False AMCG00014374
TU90285 other upstream 20003319 28329739 ~ 28332482 (-) True G72236

Expression Profile