RNA id: AMCG00014308


Basic Information

Item Value
RNA id AMCG00014308
length 3210
RNA type mRNA
GC content 0.61
exon number 21
gene id AMCG00014308
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8386165 ~ 8401359 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACCTCGTCACCTGTCTGCTGGACTTCCGCCTCAACTTTGCCTCCAACCGTGGCATTGTTCCCCGGCTGGCCGCCTCGCTGGCTGCCTGTGCCCAGCTTAGCGCCCTAGCTGCCGGACACCGCATGTGGGCCCTGCAGAGGCTGCGCAAGCTACTGACGACGGAGTTTGGCCAGTCCATCAATATCAATCGGCTCCTGGGAGATGCGGAGGGCGAGCCCCGCTCTATGGGTTTTACCGGCAGTGCCTTGGCGGCTTTGGTGAAGGGGCTTCCGGAGGCGCTACAGCGACAGTATGAATACGAAGATCCAATCGTTCGAGGAGGCAAGCAACTGCTCCACAGTCCATTCTTCAAGGTGCTGGTGGCCCTGGCCTGTGACCTGGAGCTGGACACCCTGCCCTGCTGTGCCGAGACGCACAAGTGGGCCTGGTTCAGGAGGTACTGCACGGCCTCCCGGGTGGCTGTGGCGCTGGACAAGAGGACCCCACTGCCACGGCAGTTTCTCGATGAGGTGGCCAAGAAGATCCGCGAGCTCATGGCCGACAGTGAGAACATGAATGGCCTTCACGAGAGCCATGATGTGTACAAGAGGGAGCAGGACGAGCAGCTTGTGCAGTGGATGAACCGACGGCCAGACGACTGGACCCTGTCAGCGGGGGGCAGTGGGACGATCTATGGCTGGGGACATAACCACCGAGGTCAGCTTGGGGGTATTGAAGGGGCAAAGGTCAAAGTTCCCACCCCGTGTGAAGCCCTGGCCACCCTGAGACCCGTGCAGCTCATCGGAGGAGAACAGACCCTCTTCGCAGTGACGGCTGATGGGAAGCTCTACGCTACGGGCTACGGTGCGGGGGGCCGTCTGGGGATTGGAGGCACAGAGTCGGTATCCACCCCCACCCTGCTGGAGTCCATCCAGCAcgtcttcatcaggaaggtggCCGTGAACTCGGGGGGCAAGCACTGCCTGGCGCTGTCCTCCGAGGGAGAAGTGTACTCCTGGGGTGAGGCCGAGGACGGGAAGCTGGGCCATGGGAACCGGAGCCCCTGTGATCGCCCGCGTGTGATCGAGTCTTTGAGGGGCATCGAGGTGGTGGACATCGCTGCCGGGGGGGCCCACAGCGCCTGCATCACCGCCAGCGGGGAGCTCTACACCTGGGGCAAGGGCCGCTATGGCCGCCTGGGCCATGGGGACAGCGAGGACCAGCTTAAACCCAAACTGACCCTGTGCCTAACCGACGACGACACGGTGTGGTCCTGGGGGGATGGGGACTACGGCAAGCTCGGCAGGGGAGGCAGCGATGGCTGCAAGGTTCCCATGAAGATTGACTCCCTCACTGGTCTTGGAGTTATTAAGGTTGAATGTGGATCTCAGTTTTCTGTGGCACTAACCAAGTCTGGAGCTGTGTACACATGgggCAAAGGAGACTACCACCGGCTGGGCCACGGCTCGGACGATCACGTGAGGCGACCGCGGCAGGTCCAGGGACTGCAGGGGAAGAAAGTGATCGCCATCGCCACCGGCTCACTGCACTGCGTCTGCTGCACTGAGGATGGAGAGGTGTACACGTGGGGAGACAACGACGAGGGCCAGTTGGGAGATGGCACCACCAACGCCATCCAGAGGCCCCGGCTCGTGGCCGCGCTGCAGGGGAAGAAGATCAACCGCGTGGCCTGTGGCTCGGCGCACACCCTGGCCTGGTCTACCAGCAAGCCTGCCAGCGCTGGCAAGCTGCCCGCTCAGGTTCCCATGGAGTACAATCACCTGCAGGAGATTCCCATCATTGCGCTGAGGAACCGGCTGCTGCTTCTGCACCACATCTCTGAGCTCTTCTGCCCCTGTATCCCCATGTTCGACCTGGAGGGCCGGCTGGGAGAGACGGGACAGGGCCCCTCCGTGGGCTTCGACACGCTCAGGGGCATATTGATCTCTCAGGGCAAGGAAGCTGCTTTCCGCAAGGTGGTTCAAGCCACCATGGTCCGGGATCGGCAGCACGGACCCGTGGTGGAGCTCAACAGGATACAGGTGAAACGCTCCAGGAGTAAAGGAGGTCTGGCAGGACCCGATGGCACCAAGTCTGTCTTCGGCCAGATGTGTGCCAAGATGAGCTCCTTCAGCCCAGACAGCCTGCTCCTCCCACACCGCGTCTGGAAGGTCAAGTTTGTAGGGGAGTCTGTCGATGACTGCGGGGGAGGCTACAGCGAGTCTATCGCGGAGATGTGCGAGGAGCTGCAGAACGGCCTGACTCCGCTGCTCATTGTCACCCCCAACGGCCGGGACGAGTCGGGGGCCAACCGGGACTGCTTCCTCCTGAACCCCGCCGCCAAGTCGCCGTTGCACATGACCATCCCATTGAGCCTCAACCTGGCTGAGCCCGTGTGGAAGCAGCTCGCCGGGATGAACCTGACAATTGCTGACCTCAGTGAGGTCGATAAAGACTTCATCCCTGGCCTGATGTACATCCGTGATAACGAGGCGACGGCGGAGGAATTTGAAGCCATGACCCTTCCATTCACTGTGCCAAATGCGAGTGGCCAAGACATCCAGCTGAGCTCCAAATACTCACACATAACCCTGGAGAACCGCGCGGAGTATGTGCGATTAGCAATAAATTACAGACTCCACGAGTTTGACGAGCAGATGTCGGCGGTCAGGGAGGGAATGGCTCGTGTCGTACCCGtgcctctcctgtctctcttcACTGGATACGAGCTGGAGACCATGGTGTGCGGAAGCCCAGACATCCCTCTGCACCTGCTGAAGTCAGTGGCCACGTACAAAGGCGTAGAGCCCACCTCCTCCCTGGTCCAGTGGTTCTGGGAGGTGATGGAGTCCTTTTCCAACACGGAGAGGTCTCTGTTCCTCCGGTTCGTGTGGGGCCGGACCCGACTGCCCAGGACCATCGCGGACTTCCGAGGCCGGGATTTCGTCGTTCAGGTCCTGGATAAATACAATCCCCCGGACCACTTCCTCCCAGAGTCGTACACCTGTTTCTTTCTGCTGAAGCTGCCCCGATACTCCTGCAAGCAGGTTCTGGAGGAGAAGCTGAAGTACGCCATTCACTTCTGCAAGTCTATCGACACGGACGACTACGCGCGCATTGCACTGACCGGGGAGCCGGCGGCGGACGACAGCAGCGAGGACTCGGACAACGAGGACGCCGATTCCTTCGCCTCCGATTCCACACAGGACTATTTAACCGGGCACTGA

Function

GO: NA

KEGG:

id description
K10595 HERC2; E3 ubiquitin-protein ligase HERC2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86247 lncRNA upstream 249955 8133288 ~ 8136210 (+) True G69023
TU86229 lncRNA upstream 371162 8014744 ~ 8015003 (+) True G69006
TU86203 lncRNA upstream 511423 7874527 ~ 7874742 (+) True G68982
TU86116 lncRNA upstream 759761 7625988 ~ 7626404 (+) True G68904
TU86061 lncRNA upstream 916855 7469078 ~ 7469310 (+) False AMCG00014272
TU86463 lncRNA downstream 332964 8734323 ~ 8735939 (+) True G69206
TU86492 lncRNA downstream 489227 8890586 ~ 8890834 (+) True G69232
TU86614 lncRNA downstream 965178 9366537 ~ 9376350 (+) True G69326
TU86679 lncRNA downstream 1500091 9901450 ~ 9910048 (+) True G69384
TU86698 lncRNA downstream 1573065 9974424 ~ 10028351 (+) True G69400
AMCG00014307 mRNA upstream 3881 8343001 ~ 8382284 (+) True AMCG00014307
AMCG00014306 mRNA upstream 64426 8263436 ~ 8321739 (+) True AMCG00014306
AMCG00014299 mRNA upstream 135230 8204822 ~ 8250935 (+) True AMCG00014299
AMCG00014293 mRNA upstream 224885 8160408 ~ 8161280 (+) True AMCG00014293
AMCG00014294 mRNA upstream 254372 8128204 ~ 8131793 (+) True AMCG00014294
AMCG00014309 mRNA downstream 77623 8478982 ~ 8507687 (+) True AMCG00014309
AMCG00014314 mRNA downstream 393869 8795228 ~ 8824532 (+) True AMCG00014314
AMCG00014315 mRNA downstream 473808 8875167 ~ 8875832 (+) True AMCG00014315
AMCG00014313 mRNA downstream 542636 8943995 ~ 8972432 (+) True AMCG00014313
AMCG00014316 mRNA downstream 603141 9004500 ~ 9020633 (+) True AMCG00014316
TU86046 other upstream 969571 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 1036698 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 3734201 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 3734201 4649200 ~ 4651964 (+) False G68475
TU84898 other upstream 5675836 2709024 ~ 2710329 (+) True AMCG00014146
TU86705 other downstream 1601699 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 5935499 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 7274272 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 7274272 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 7728166 16129525 ~ 16132802 (+) False AMCG00014508

Expression Profile