RNA id: AMCG00014311


Basic Information

Item Value
RNA id AMCG00014311
length 1470
RNA type mRNA
GC content 0.47
exon number 10
gene id AMCG00014311
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8731578 ~ 8758181 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACAATGGGATGCTCTTCTGTGGGACAATGAAAACTCCCTTGGTTTATCTTTTGTTCATCGGTTTGACCTGCCGCCTTGGTTTATCCCAGATAGCAGGAACAGTTAATGAAGAAACAAACGACAATATTACCATCTTCACCAGGATCTTGGATGGCCTGCTTGATGGATACGACAACAGGCTGCGTCCTGGACTTGGAGaaaggTTAACAGAGATCAAGATAAATATCTATGTTACGAGCTTCGGCCCTGTCTCTGACACTGAAATGGAATATACAATTGATGTTTTCTTCCGCCAAAGCTGGAAAGACGAACGACTTAAGTTTAAGGGTCCAATGGAAAACCTCCCCTTGAATAACCTTCTAGCCAGCAAAATTTGGACTCCAGACACCTTCTTCCTCAATGGCAAGAAATCCATTGCTCACAATATGACAACTCCCAACAAACTGCTCAGGCTGAAGGATGATGGGAGTCTTCTGTACACAATGagGTTAACCATATCAGCCGAGTGCCCTATGCAGCTTGAAGACTTCCCCATGGATGCGCATGCGTGCCCTCTGAAGTTTGGGAGCTATGCTTACCCTGTTTCTGAGGTCGTTTACACTTGGACACAAGATGCTGCCAAATCCGTGGTGGTGGCTGAGGATGGCTCAAGACTAAACCAGTATCATCTGATTGGGCAAACAGCTGGAACTGAAGACATCCATACCAGCCGAGGTGTTACCACTGTGCTCACCATGACAACACTCAGCATCAGCGCCCGAAACTCTTTGCCAAAAGTTGCTTACGCCACAGCCATGGACTGGTTTATAGCAGTATGCTATGCTTTTGTCTTTTCCGCTTTAATCGAGTTTGCTACTGTCAACTACTTCACCAAGAGAGGCTGGGCTTGGGATGGGAAAAAAGCCCTGGAGGCATATCAGCCCAaaaaaaaggaCCCCATGGCACTGtcaaagaaaccaaacaacGCCTGCTCCACCGGTGTGAACTACACACCGAATATGACAAAAGATGCTGTCCTTTCGACCATTACAAACAGCACATCTTTACAGTTGAAACCTGCTGAAGTCAAAGCCCCAGATCCTAAAAAGACTTATAACAGTGTCAGCAAGATTGACAAAATGTCGAGGATTGTCTTTCCTGTGCTGTTTGGGACTTTCAACCTCGTTTACTGGGCCACATACTTAAACAGAGAACAAATGAAGGCTCTCTTTGTTTCCTTTGAAGAAATGGAATACCTTCTCAACTTCTCTTTGGATTATGTGTGCGTTCACCCTGGCCGGGGTGCCTGTGCGGTGGAAGGAATACAGAATGTCATACCCTGCAGCATGGAAGCAACATCTGACCTTTATAGACTAGTGAAGAAGAAATGCGCCGCTGGCAGCTGGGTGCTCTGTCTGGGAGAGCGGCTGCCCATCGCGCTGTCCGTGGTCCTGGACATCATCCTGTACAAAATAGTCATCGAATAA

Function

GO: NA

KEGG:

id description
K05175 GABRA; gamma-aminobutyric acid receptor subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86331 lncRNA downstream 481017 8226494 ~ 8250561 (-) True G69086
TU86291 lncRNA downstream 595384 8134903 ~ 8136194 (-) True AMCG00014297
TU86202 lncRNA downstream 857220 7874153 ~ 7874358 (-) True G68981
TU86117 lncRNA downstream 1105203 7625985 ~ 7626375 (-) True G68905
TU86087 lncRNA downstream 1265916 7465409 ~ 7465662 (-) True G68875
TU86493 lncRNA upstream 132375 8890556 ~ 8890839 (-) True G69233
TU86513 lncRNA upstream 240245 8998426 ~ 8998626 (-) True G69250
TU86641 lncRNA upstream 591607 9349788 ~ 9355238 (-) True G69352
TU86667 lncRNA upstream 831643 9589824 ~ 9590081 (-) True G69372
TU86668 lncRNA upstream 832995 9591176 ~ 9591381 (-) True G69373
AMCG00014310 mRNA downstream 116577 8601162 ~ 8615001 (-) True AMCG00014310
AMCG00014312 mRNA downstream 192529 8536937 ~ 8539049 (-) True AMCG00014312
AMCG00014304 mRNA downstream 397126 8330056 ~ 8334452 (-) True AMCG00014304
AMCG00014305 mRNA downstream 405158 8322434 ~ 8326420 (-) True AMCG00014305
AMCG00014303 mRNA downstream 426397 8304531 ~ 8305181 (-) True AMCG00014303
AMCG00014317 mRNA upstream 271924 9030105 ~ 9040045 (-) True AMCG00014317
AMCG00014319 mRNA upstream 289123 9047304 ~ 9050642 (-) True AMCG00014319
AMCG00014320 mRNA upstream 302852 9061033 ~ 9085213 (-) True AMCG00014320
AMCG00014318 mRNA upstream 373234 9131415 ~ 9135387 (-) True AMCG00014318
AMCG00014326 mRNA upstream 386357 9144538 ~ 9147337 (-) True AMCG00014326
TU86412 other downstream 347354 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 572988 8156229 ~ 8158590 (-) True AMCG00014298
TU86293 other downstream 592452 8137331 ~ 8139126 (-) False AMCG00014297
TU86071 other downstream 1308287 7417598 ~ 7423291 (-) False AMCG00014278
TU86038 other downstream 1350798 7378088 ~ 7380780 (-) True AMCG00014271
TU86630 other upstream 552270 9310451 ~ 9317167 (-) True AMCG00014328
TU86854 other upstream 2038535 10796716 ~ 10798147 (-) True G69537
TU87063 other upstream 2901840 11660021 ~ 11662493 (-) False AMCG00014374
TU90285 other upstream 19571558 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 20631109 29389290 ~ 29398305 (-) True G72477

Expression Profile