RNA id: AMCG00014313


Basic Information

Item Value
RNA id AMCG00014313
length 6478
RNA type mRNA
GC content 0.45
exon number 20
gene id AMCG00014313
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8943995 ~ 8972432 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tcaatCATAAAATTTCCCCTGTTGTTACTCTGTAGGCATGAAAAGAAATACCTGGAGAAATACTGGAAAGAAATCCAAGTTGGGGATTTCATTCGGCTGCGGTGCAATGAGATCATCCCTGCAGATGTCCTGCTCCTGTCCTCCAGTGACCCAGACCGCTTGTGTTACATTGAGACCGCCACCCTGGATGGTGAGACCAACCTCAAGCAAAGACAGGTGGTCCGGGGCTTCATTGATCTGGATTGTGAATTTGACCCAATGAAGTACAACAGCATTATTGAATGTGAGAAGCCAAATAATGACCTCAACAGGTTTCGTGGTTACATcattCACAAAAGTGGAAAGAGAGATGGGCTTTACAAGGATAACCTCTTGCTTCGAGGATGCACTATTAGAAACACAGAGGAGGCTGTAGGAATAGTTATTTATGCTGGTCATGAAACTAAAGCAATGCTGAATAACAATGGACCCCGGTACAAGCGCAGCAAGCTGGAAAGGCAAATGAATATTGATGTCTTTTGGTGTGTTATCATACTTGTTGTTATGTGCCTGTTTTCAGCAATTGGTCACGGTCTGTGGGTGTATCAATACGGAGACAAGCGGCCAGTGTTTGATGTCTTGAGTCCTGAAGGAACTGAAATGTCTCCTGCTCTGTCTGCTATATACCTGTTCCTAACCATGATCATTGTTTTTCAGaTCTTAATTCCCATCTCTCTGTTTGTGTCTAttgaaattgtgaaaatatgccaagtgtatttcattcatcaagACATGGACTTGTACGACGAGGAGACGGACTCTCACCTCCAGTGCCGGGCCCTTAACATAACCGAGGACTTGGGGCAGATGCAATACATCTTCTCTGATAAAACTGGCACTCTCACGGAGAACAAGATGGTGTTCCGGAGATGCACAGTGATGGGAGAGGAGTATTCTCATGATGCCAATGCGAGAAGACTGGCAATGTACCAAGAGGCGGACTCTGAAGAGGAGGAGTGCACGTCCAGGGGCGGGACGTTGCCGCGGAGGGACAGCGTGACGAGCCATCACAGCGCCCGCGTCGTCCACAGGACACAGAGCACCAAGTCCCACCGCCGGACGGGCAGCCGTGCTGAGGCCAAGAGGGCCAGCATCCTCTCCAAGCACACGGCCTTCAGCAGCCCCATGGAGAAGGACATCACTCCTGACCCCCAGCTCTTGGACAAGGTGAATGAATGTGCCGTCCAGATGGACTCCATGCGAAGTCATGGCCAGCCTTTGAGCCAGCTGACCTCTGAGCTCTCGGACATAATCGACTTCTTCATTGCTTTGACAATCTGTAATAATGTTGTCGTGTCCTCCCCAAATCAGCCGAGGCAAAAGGTGCGGATGAGGTTTGAGCTGAAATCTCCAGTGAAGACTATCGAAGACTTCATCAAACGCTTCACCCCGAGCCGCCTGACGTCCGGGTccaccagcagcagctcctccagccTGGTCACCAGCCGGTCAACACACAAGACGTCCAGCGTCCTCTCCTCGCCCTCCGCAGAGAGCACTTTAATCAGACTGGAGGAGGAGCTGCCCCATGCCCCCCACGTCCTGGAAAGTGCCCTCGGCTCCGCCCACCTGGGCCTGGAGGCAAAGGCCTGCCCCTTGGAGGAAGGCGAGCTACGCTATGAGGCGGAGTCGCCCGACGAGGCGGCCCTCGTCTATGCCGCCAGGGCCTACAAGTGCTCCCTGGTGGGCAGACTTCCTGACCAGGTCACGGTGGAGCTGCCACACCTGGGCAAGCTGAACTTTGAACTCCTGCACACGCTGGGCTTCGACTCCACCAGGAAGAGGATGTCAGTGGTGGTCAGACACCCGCTGACGGACCAGATTGTTGTTTACACCAAAGGAGCCGACTCGGTTGTTATGGACCTCATTAAGCCGTGCTCTACAGATGATACCAAAGGTAAACGGCAAAGGAAAATCCTGACTAGAACCCAACATTATCTGAACTTGTATGCTGCTGATGGCCTCAGGACCCTTTGTATTGCTAAAAAGGTCCTCAGTAAAGAAGAATATGCAGGCTGGTTAAAAAGTGCAACTGGAGTTGAAGACCGTTTACAGGATGGGGTACCAGAAACTATTGCTGCGCTACGGAAAGCTGGTTTACAAATATGGGTGCTAACGGGTGACAAGCAAGAAACCGCCATAAACATTGCTTATTCCTGCAGACTTCTAGACCCTGAGGAAGAGATTATTACTCTGAATGCAGAGACGCAGGAAGCATGTGCTCTACTGCTGGATGAGAGTTTACACTATATCCAATCCAAGTTTCTCGGCAGCACACCAGACCATGCAGCTAGGATCTTTGAGGAGGATTTTGCCGCTTTTGAAAtgccccccacctccacctTTCTGGTCCATCGCCTGGGCTTGGTCATCGATGGCAGAACGTTGGCCTATGCTCTAGATAAAAGCCTGGAGGACAAATTCCTTGCTGTGGCCCGCAGCTGCAGATCAGTGCTGTGCTGTCGGTCCACCCCGTTACAGAAGAGCATGGTGGTGAAACTGGTGCGCAACAAACTCAAAGTGATGACCTTGGCTATAGGCAAGTATCTCTGTGGCCCTGCATACACTGAGAAATGGTTGAAAGGTGATGGAGCTAATGATGTCAGTATGATCCAGGTCGCTGATGTTGGAGTGGGGATTTCGGGACAGGAAGGCATGCAGGCAGTGATGGCCAGTGATTTTGCCCTCCCGCGCTTCCAGTATCTGCAGAAACTCCTTTTGGTTCATGGGCACTGGTGTTACTCTCGTTTGGCCAACATGATCCTCTATTTCTTCTACAAAAATGCAATGTTTGTAACCCTCATTTTCTGGTACCAGTTTTACTGTGGGTTCTCAGGATCAACCATGATAGATCAGTGGTACATCATTTTCTTTAATCTGATGTTCTCTGCCTTCCCTCAACTCATCACTGGAACCCTTGACAAAGATGTTTCTCCGGAGATTCTCCTAGAACTACCTCAGCTCTATAGAAATGGACAGAACTCAGAGGAATATAAGCCATACATGTTCTGGATGAATATGATTGATGCTTTCTACCAAAGCCTTGTCAGCTTTTTCATCCCTTATTTTGCATATGCTGACTCGGATGTTGATTTGATTACGTGGGGGACTCCCATCATCACCATCACACTCTTTACCATTTTGTTGCATTTAGGAATTGAAACCAAAACCTGGacatgGCTCAATTGGGCCTCCATTGCTTTCAGCATCGTCCTGTTCTTCATGGTTGCCCTCTGCTACAATGCCTCTTGTCCTACTTGCTTTTCTCCATTCAATCCCTACTGGACCATGCAGAAGCTTATGGGGGACCCCACATTCTATGTGCTGTTAATTATCACCCCCATCGTTGCTCTGATGCCCAGATACTTCTACAGAGCGTTTCAGGGAACACTATTCCCCAGCCCGGTGCACGTGGGTCGCCAGTTGGACAAGCTTTCCCCCGAAACCCGCAGAAGCATTGTAAGCCAAATCAAAGCCAAAGCCGGAGCATCATTTGGTCCCGTACCTACATTTTATCAGTTTCCCGGACCTTTTCCAAGGGATTACGTTCACAGGACCGAAGAATCCCATTCTTGCAAGAGGCGAGGAAATCCCAAAGACTCTAAACAGCCAGGAACCCCTCTAGCTGCTGCTCCAAATGCGCAGGATGATGAGAGAGACTCTGACTGGACAACAGGGAACTCTTTCGGGGCCGTGCACAATAAGCAGGACAGTGCTGAACCCAAAAGTCCTACAGTTTCAGAAACTGATACTCTGCCTTATTCCAAAGAGACCTCCAGGCCCACTGTGGATTTTGAGCCTCCTTCCTTTGAGGACAATGTGCAGCTCGACTCCAACACTGCAGACTTTAGTTTAGTGAAATGGATAACGTCAACTCCTTTGTTTACCCAGACAGGGCGTGCACTGCAGTCAACTTCATCTCATGTGAGCTTACCAGCTGCAGAGGAAAGCGAGGGGATCTCTCTGCCTTCCAGCAACCAGCACAGACTGGACAATACTGTTGACCCCGACAGGTTAAAGGAGGGCACTCTTGAAACAACGTTATTATGACATATTTTAgaccatttatttaaatttaaattgcacGCTAGTTGTACAATATTCTCTTTTCATAATTTGAGCATTCTTTTATAAAGATAAAATAGGtaccatatatatttataaatgtgtgtgtatatgtatatacatttaattactaACCTCCGTTATTTTAGGTTTCATATCTAAAATTTTCCCCGTTTCTCTTATTTTTGGAGAGTAGAAGGCTTAGGAAACTGGACACGCTCCATTCTCTTGAAAGTTTACAAagtccttttttttctcattagaGACCAGAGGCATGTATTGTGCTTGACTGGAGAAATTCCTATACAGATGTGTTTGGGActacttttgtttagttttgccCAATATATAACGCAATGGATATCATTAGTTATTAAAGTCATTAAGAGTTTATTTAATGGCTATGGTATCAGACTCAAAATGGGCATGCAAATTAGTTTTCACATCTTGTTGCATTCCATTTCTGCACAATTAAGTCACAACTAGTTAGCTACTACAGCTTACAGTTTTCTGCTTTTAGAACAAGACCCTTCAAGAGGTCGGTTTTTCAATCCAACATCCACTTGCGATCAGGTGTTTGGTAATTAAAACAAGGGAATGTTAAGAGTGGTACTGAAGTTATAGGTTAATGACCAATCTGTGACccatagatagatggatagatagatataatatGACTCCATTCCAAAGGAACCAAGTTTGAATTCGGTCAcacttttgtttcctgtttttatgaTTATGCTGCTCTTTTATTGGTTAAAGGACACCATGTGGTCTATACATGTCAAGTGTTCTTCAATAGATTTTACTGGCCTTATTCACACAGACAATGTATGTGGTTAGTTTAATCCCAGCTGCGGTAATGGCAAAGATTAATTTGACTCTGACGATGTCTGTATTTCCTATTAGAGGATACGTGTTAAGCATATAAATACTGGAATCACTCTTATCTGGGACCAGAGAGCTAGGTACTAGTTTAGAACGACTTCCATGTATGAAAACACTACAACGCAACACTACTACAGTGTCCTTCATGGGCGCTTTTCTCCTTTTATGCGGCGAGAGCGGGTGGTGTGCCTGGAGAATCGGCATGCTCAAATATGCAGGTTACAGAAAATCATACAAGCGCCGGGACCCCGAGGACACGAAGACCGCCGATTCCACGAAAGTGTTGCCTTGGATCACATACTCTGTGCTGACAGCGCTGTTATGGCAttccttataaaaaaaaattctttaTATGTATCCCTAATCCCTTGGAAAATTTGAATTAAGGTAACACAACATATCAGGACAGACCATAGCTATATTAATGTACAAATCAGGAagctaacttttttttattgtcaaatttatttttcttttagctgttatatatatatgtgtgtgtgtatatgaataatgtgtgtgtatatatatttgtatatgtatatactttatttCTGTGTTCCTGACTACATTTTCAGGACGCTAGACTACTCCTAAATCAAGCTGGTCACATGGTCAGGATGTTGTCTTGTGTAGGGCTGCAGAGAGCTCGATTTTGTTGCTGGTGCACGTCTAATAAATTGTGTGAAGTGAAACGTCATGTACGCTCTCCAAGGCCACCTGACAGATTACTTGCATTGTATTGATATATTGCAAAGGTAAAAATAATCAGCCATAAATTATCATTTGTGATTTTactttttcacaaaaataagaTGACTGAGAATGCAATATATGACAGATGAAAACCATAACTGCTATTTTAGTGTATGTAGTTGCATTATGCTTTTTTCACAAAATAGGCTTGAAAATACATACTGGATGATACAGCTGGAAGTTCCCGTCACCGGCAGTGTCTCTGAATGGAAGCACTTGCGTTCAGGTGTTtggtaatgtaatgtacaatcAACATATCTCCTGTCGTCTGCTTGGAACAATATTCAATGTTTTGACGATTTCGCCTTTGGTCTGTAAGGGAGGCTACAATCCCTTCAGGGAGCACAAGAGTTTAggattctttttttgtttgttttttaacctaGATTTGCCAAAGGGATTCATGTCTTGAAAGATCTGACCAATAATGCTGCCTGCTTTGACGTCTCTCCTTCATCTGAATTTCTACATTAGGAATTCAAATCATCTTCAGAATGTAgttaaatagttataataaaatacttaGTTTACTGAATTATATGCAGATATGTTAGCATATGTTAAAGAACGTTGTTCGGAACAATACCTTGTTTTGTAAGATGCATAAAAGAAgccataatttattttccaatttactGACCTGCTGGTCAGTTGAGttgcatatatttttacagaacaATATTATGTGCCTGAACACTGGATGCAGAATCTTGATTAAAACAACACTGCC

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0006812 cation transport biological_process
GO:0045332 phospholipid translocation biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K01530 E7.6.2.1; phospholipid-translocating ATPase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86492 lncRNA upstream 53161 8890586 ~ 8890834 (+) True G69232
TU86463 lncRNA upstream 208056 8734323 ~ 8735939 (+) True G69206
TU86247 lncRNA upstream 807785 8133288 ~ 8136210 (+) True G69023
TU86229 lncRNA upstream 928992 8014744 ~ 8015003 (+) True G69006
TU86203 lncRNA upstream 1069253 7874527 ~ 7874742 (+) True G68982
TU86614 lncRNA downstream 394105 9366537 ~ 9376350 (+) True G69326
TU86679 lncRNA downstream 929018 9901450 ~ 9910048 (+) True G69384
TU86698 lncRNA downstream 1001992 9974424 ~ 10028351 (+) True G69400
TU86728 lncRNA downstream 1082059 10054491 ~ 10054711 (+) True G69428
TU86731 lncRNA downstream 1082945 10055377 ~ 10055733 (+) True G69431
AMCG00014315 mRNA upstream 68163 8875167 ~ 8875832 (+) True AMCG00014315
AMCG00014314 mRNA upstream 119463 8795228 ~ 8824532 (+) True AMCG00014314
AMCG00014309 mRNA upstream 436308 8478982 ~ 8507687 (+) True AMCG00014309
AMCG00014308 mRNA upstream 542636 8386165 ~ 8401359 (+) True AMCG00014308
AMCG00014307 mRNA upstream 561711 8343001 ~ 8382284 (+) True AMCG00014307
AMCG00014316 mRNA downstream 32068 9004500 ~ 9020633 (+) True AMCG00014316
AMCG00014321 mRNA downstream 117442 9089874 ~ 9130531 (+) True AMCG00014321
AMCG00014323 mRNA downstream 164599 9137031 ~ 9144426 (+) True AMCG00014323
AMCG00014322 mRNA downstream 185312 9157744 ~ 9172062 (+) True AMCG00014322
AMCG00014324 mRNA downstream 286862 9259294 ~ 9273055 (+) True AMCG00014324
TU86046 other upstream 1527401 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 1594528 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 4292031 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 4292031 4649200 ~ 4651964 (+) False G68475
TU84898 other upstream 6233666 2709024 ~ 2710329 (+) True AMCG00014146
TU86705 other downstream 1030626 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 5364426 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 6703199 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 6703199 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 7157093 16129525 ~ 16132802 (+) False AMCG00014508

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00062890 True 4296 mRNA 0.50 27 NC_007117.7 38626926 ~ 38730530 (+)