RNA id: AMCG00014320


Basic Information

Item Value
RNA id AMCG00014320
length 3531
RNA type mRNA
GC content 0.50
exon number 23
gene id AMCG00014320
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 9061033 ~ 9085213 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTAAAGCTTGATTTGAAACACAAGAATGAAGCAGGAGCCCTGGACCGGTATGACCACAGCAGGAGACGTGCTGAGACAGGCGCACAGGGCAGCATGGTGGCGCAGAAGGAAACTCAGTTTGAGCCTGATGTCTGCCCCCTCATCTCCTCTCCGAAGTGGTTGAAGCTTCACGGTCTGAAAGAAAGCAGACTTGCCCTCTACCAAGTCCTCTCACAGATAGGATTCAAACACAGTGAAGATTATGTTCACTCATTGAGAAAACCAGTCTCTTCCCAGTATGCAGAAGGCCTGTTCTTACAGTTCATGAAAGATGGCAGTATTTATAATCTCACAGCCCGGAGAGACCAGCTCCAGGAGATCACTGAACGGCTGTCCAGGAAGGTCAGTCTGTACCAGCAGAGACTGGACTGGCTGACCAGTGGCAGTCGGCAGCTGTGTGGTGTGATCCAGGAGCGCTCGACCACGCTGGTCCTGAACTTTGGGACCGTGTCCAGTTCTCAGTACGACCTGAGCCGTGACGCTGTGTGTCAGGTCATCAGGGAGCAGGTGTCACAGATTGCAAGATTTAATCTGATTTGCTCCTCTCCTGACTTGAAAATGTGGCAGGAACAAGCGGTGCAGACCTCTAAAGCGAACACAGACTCTGCAGTTGAATGGATTTGGACGTTAGAACATAAACCAGCAACGTCTCAGTTCAGCACTGCTGAAGCTTTGCTGAAGGCCATGAGTGATAAAACAATTGAGGCGGTTTATCTGTTTGCTGCTGGGGactataaagaaaatgtgtccGACCTGCTGAGGAATAAGCTGGTGAATAGTGTGTGTCCCATCCACACGATATCCTTCAATGCTAAAAATGAGGAGACTGTTAAATTCCTGAAGGCTTTAGCTCATCTGACTGCTGGGAGGTTTCATGCTTTTGCTGAAATGCATGCTTCTGAGGTGGTTTCATTTGATGACGGTGAAGAGGGTGACAGGACCGAGTACTTTCCCAACATGCCAAAGAGACCTATAGGAGGGGTGCCTCCTGGGGCTGGTGTCAGGGAGGATGTCTTCTTAATCTGGAGAGAGATGGAAGAGGCCAGAAGCACCATCGCTCAAATTCAGGCTATATTACTGGagtatcctcagacagcagggTATAAAGATCCACCAGGTCTTGGAGCTCCTGAAATGCCACAATCAGAAGACAGCATGAGCTCCAAAACCTGGCTGGCAAAGTACGGTCTGAGAGCCCAGAAGCTGTCGTTCTACAATGCCCTCGCTGATTGTGCGTTTCGCCATTCGGATGGTGTCGTGGATGTGAAATCCAAACCGGCTGAAGAGAGTCTGCAAACGGACGCAGAAAAAAGACACAAGCTTGTCAATGCCAAATACTGTGACAAGTTTGCTCACACCAAATGGAAAGATGGCTCTGTGGTTCATGTGTACGTGACAGCGGAGAAGTGTAAGTGGTATGAAGACAGGATGAAGACAGCCCTTACAAACCTACAGAAGAGGCTGCAATGGCTTCAAAATGGCAGCCGGGAGCTGTTTGGAACCATTCTTGAGGATCAGGTATACGTCCTTATAGACACCTCGGAGTCCATGAAGGACCAGCTTCCAACATTGAAGCAGAAGATCTTCCAGCTAATGCAgGAACAGCTTCGTCACAAAGCCAAAGTGAACTTCGTCAAGTTTGACTCACGCGTGGCAGCTTGGCGTGACAGACTGGCTGAAGTGAACGAGCAGAATTTGGAGAATGCGTGGTATTGGGTCAAAGGCCTTCAGGTGGGGGGCTCAACAAACACTCTGGGTGCTTTGAGACTGGCGATAGCAGATGTTGGTACTCACGCTGTCTACCTCCTAACAGATGGAAGACCAGATCAGCCTCTGAAGACAGTCCTGGCCCAGGTACAGCTACAACCCCCAGTTCCTATTCACACCATCTCCTTCAACTGTGATGACCTGGAGGCCAACACTTTCCTGTATGAGCTGTCCAGAGAGACTGGGGGCCGATACCACTGCTACTGTTGTGACATTAGTGAGCCCGGGGCACCTCCACCCTTTGTGAGTGAAGATATCCACCTACTGAAGATGGAAATTGAACAAGGAGAGAAGGACTTGGAGAAAGTGCTAAAGCTCCGTGCCGAGTGTGTCATGTTGGACTGGTATCACAACGGAGAAAATCAGATGGTTAAAAGGGGGCATGAGAAAGCGCAAAATTCCTCGAAGCTGCAGCCCGGGTGTCAGGATGTGACAGCAGCTCCGAGGCCTCAATCAGCTGTAGAGCGGACTGTAGCCTCCCATCGCAACCACCGACAGCAGcttcacacccacacacccgaGCCGCCCAAACCACACAGCCTGCACACACAAAAGATACGTCATGCAGcACATACAAAAGCCAGTCTGCTCAGACTGCAGAGCAATGGTGTAGACATCAGTGACAAAGACAGTGGTCTCAAAGAATGGATGCTCCCAGAAACATTGTCTGTGTTCAAAAGGAACATCGATAAGAAAACCTGTGTTCTCAACGCTCGCTGGCTTAAAGTAAACGGTCTGGTTGCGAGGAGACTGACCTTGGTTGATGCCCTGGCACCTACAGCTATACCACAGACGGCCAAATATGTTCCAATACTGGACAAACACGTTTATTCTAAAGTGTTTGATGAGGTGCTGCCCTTGGCTCACGTCAGCAACAGTAAGCGGCATCTCACCCTCATCAATCCTCAAGCCGTGAATCTGGACGCCTATAGGAAGAAACTTGAACATGCTCTGAAATCCTACAAAAGGCGGCTCAATTTGATTGTATGGAGAGCACTGAGCCAAGAAGAAAGGGATAaGTTTGGCAGTGAGAAGCCTCTGCCATTCGGAGAGCACAAGGAGGCCCTGCTGCAGGCCCTGGACCGGCTGGGGTGGCCCGTAGCGCAGGAGGACGTGTCTCTGCTGGAGGACGAGATTGACAACGCACAGTCCTTCCTGCAACAGGCCGAAGACCTGCAAAAGGCCGTGGGGAAAGGCAAGGACCAGGGCAAGGGCAGCAGACCTGGCAGTTCTCAAGATGGACACACAGAAGAAACAAAGGATGAAAAGAGAAATGCTTCTAAGAAACGCAAGGCACTGGACTCTCTCAGAGGTCAGAAAGTCATTGCAAGGTCAGACATTGATGGCTTTTATTATCCTGgTACGGTGTCAAAATGCCTCAACTCCAAAAGAGCCATTGTAGATTTCAGCCACGGAGACACTCAGATTGTTCCTGTGGGTTTTTTGATACCTGTCGGAGGAAGTGGCCCTTGTCCTCCGCTTGCAGTCGgggattttgtgtttgttggatGTGGGACAGGAGACGCAAGTGATTGCTTTGTCCCTGGAGTTGTCATAGCAACCCCTCGCAGAGTGGAGGCCGCAGACAAATTGTACACGATACTGAAatacaacaacagaaaagtgAGTAAGATTCAGCCATCATCACATAGCACATCATTCAAAGGGGTCATTGTGTTCGTGTTAAGGACAGTTGAACTCCATAAAATAGTTGTCCTCCTTCTG

Function

GO: NA

KEGG:

id description
K24509 VWA3; von Willebrand factor A domain-containing protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86513 lncRNA downstream 62407 8998426 ~ 8998626 (-) True G69250
TU86493 lncRNA downstream 170194 8890556 ~ 8890839 (-) True G69233
TU86331 lncRNA downstream 810472 8226494 ~ 8250561 (-) True G69086
TU86291 lncRNA downstream 924839 8134903 ~ 8136194 (-) True AMCG00014297
TU86202 lncRNA downstream 1186675 7874153 ~ 7874358 (-) True G68981
TU86641 lncRNA upstream 264575 9349788 ~ 9355238 (-) True G69352
TU86667 lncRNA upstream 504611 9589824 ~ 9590081 (-) True G69372
TU86668 lncRNA upstream 505963 9591176 ~ 9591381 (-) True G69373
TU86677 lncRNA upstream 809513 9894726 ~ 9895580 (-) True G69382
TU86687 lncRNA upstream 816144 9901357 ~ 9912021 (-) True G69391
AMCG00014319 mRNA downstream 10391 9047304 ~ 9050642 (-) True AMCG00014319
AMCG00014317 mRNA downstream 20988 9030105 ~ 9040045 (-) True AMCG00014317
AMCG00014311 mRNA downstream 302852 8731578 ~ 8758181 (-) True AMCG00014311
AMCG00014310 mRNA downstream 446032 8601162 ~ 8615001 (-) True AMCG00014310
AMCG00014312 mRNA downstream 521984 8536937 ~ 8539049 (-) True AMCG00014312
AMCG00014318 mRNA upstream 46202 9131415 ~ 9135387 (-) True AMCG00014318
AMCG00014326 mRNA upstream 59325 9144538 ~ 9147337 (-) True AMCG00014326
AMCG00014325 mRNA upstream 131656 9216869 ~ 9228627 (-) True AMCG00014325
AMCG00014328 mRNA upstream 220026 9305239 ~ 9316906 (-) False AMCG00014328
AMCG00014331 mRNA upstream 273634 9358847 ~ 9367036 (-) True AMCG00014331
TU86412 other downstream 676809 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 902443 8156229 ~ 8158590 (-) True AMCG00014298
TU86293 other downstream 921907 8137331 ~ 8139126 (-) False AMCG00014297
TU86071 other downstream 1637742 7417598 ~ 7423291 (-) False AMCG00014278
TU86038 other downstream 1680253 7378088 ~ 7380780 (-) True AMCG00014271
TU86630 other upstream 225238 9310451 ~ 9317167 (-) True AMCG00014328
TU86854 other upstream 1711503 10796716 ~ 10798147 (-) True G69537
TU87063 other upstream 2574808 11660021 ~ 11662493 (-) False AMCG00014374
TU90285 other upstream 19244526 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 20304077 29389290 ~ 29398305 (-) True G72477

Expression Profile