RNA id: AMCG00014325


Basic Information

Item Value
RNA id AMCG00014325
length 1874
RNA type mRNA
GC content 0.44
exon number 6
gene id AMCG00014325
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 9216869 ~ 9228627 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGCAACACGGCAGACTACCTGAGACCACCACCACCATAAAACTCAAAAAAAAGGACACCACCCGCCACAAAAGGAACTTAACTACCAAGttcaagaaaaggaaagaaagatggCAGGGCCGAATAAAGAGAATGAAGGTGGATGGAAGAAGTTTATCTGGGATTCGGAGAAGAAGGAGTTGTTAGGACGTACCGGCTCCAGCTGGTccaAGATCCTCCTGTTCTACTTAATTTTCTACGGCTGCTTGGCGGGTATCTTCATTGGAACCATTCAAGCTCTCCTCCTGACCATCAGTAACTATAAACCCACTTACCAGGACAGAGTTGCACCCCCAGgattaacacacacaccacgCTCCTTAAAGACTGAAATCACCTTCAGCCCCACTAAACCAGAAACTTACCTGGAATACATAAAGACGATGCGTGCATTCCTGGAAATGTATGATGACCTGAAACAGAATGATCCCATGAAGTTTGTAGACTGTGGAGATAAACCAGCTGATTATATTAACCGGGGAGACCTGGATGCTGAGCAAGGAACCAAAAAGGCCTGTCGTTTCAAGAGGGCTTGGCTGGGAAACTGCTCCGGTCTGACTGATGACACGTTCGGCTACAAGGAGGGCAAGCCCTGCTTCATCGTCAAGCTCAACAGGATTGTGAACTTCAGACCAAGGCCTCCAAGCAGCAACGAGAGCATCCCAGTGGAGTTCCACGACAAAATCCAGCCTTACACCATCCCGATCTTCTGTGCCGCCAAGAGAGAAGAGGATCAAGACAAAATCGGCCAGATTAACTACTACGGCTTCAATGGAGCCTTCCCTTTGCAATACTACCCCTACTACGGGAGGCTGCTGCACCCCCAGTACCTGCAGCCGCTCGTGGCCATCCAGTTTGCCAACCTCACGAACACTGAGACGCGTATTGAGTGCAAGGCTTACGGAGACAACATTAACTACAGCGAAAAGGACCGCTTCCAGGGACGATTTGATGTGAAAATCGTCCTTAGCTGATGACTGCGGCGACTGCAAGCACACTTTTCTCTGCTCCATttcaaaccaacaacaaaaaaaaacgaaaaacgaaaaaaaaaaaacataactaatCTTGAACAAACTGTCATAACATACGGGACCTACACTTAATCTATACGCTTTACACTAGCTTTTCTGCATATATCTAGGGTTAGAATGTAAATGACGGACAAAAGAGTAGCAATAGCGTGAAGTATTTATTCTACTGTAAATGAGAATATTCCTTGAGCCATGGGACATGTTCATTTATTACTGTAAATTATAATTCCACTACTGATATGTAGCGAGCAGTGTTTCTGTCCCCTAAGTATTGCTGCCTTGTGTGGTTTAAATCTATTTTTGGAGTGTACAGTACTGTAGTCGCATACAATGGTCCTTCCCAAGCCATGTTGTAATTTCCTGTATTTTCATATGTGAGCAGGCTTTAGCGGTCcaaggtgtatatatataaatgtatacttaCTAACTGAAAATACTGGCATGGTACGCTCTGATCTTTTCCGGTCCGCGTGTGAGAAAATGACTGCACTCCGTGGAGTTCTTTACCttcttttgtgtgtcttttgagTCGTTGATTGTGGGAGGataaatttaatttcttttgcATCACTTAAATGTGGGATGAAGGGTTTATTACACATTGAAGCTTTTACTTACTTCCTTTTATGCTTCTGTATGATGTAGATCTGTATGTTTGGCCTGTGTTAATCCGTCGCCCATGTGGGTAGCGGCGTTTGATCAGTGcgatttttcattttatttggttgCTGGGGGCATCACATAGTGTGATGCATCTTTCTAACGAATGTTTTAGCCATTTTTCATGGTGGaagaatttta

Function

GO:

id name namespace
GO:0006813 potassium ion transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0005890 sodium cellular_component

KEGG:

id description
K01540 ATP1B, CD298; sodium/potassium-transporting ATPase subunit beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86513 lncRNA downstream 218243 8998426 ~ 8998626 (-) True G69250
TU86493 lncRNA downstream 326030 8890556 ~ 8890839 (-) True G69233
TU86331 lncRNA downstream 966308 8226494 ~ 8250561 (-) True G69086
TU86291 lncRNA downstream 1080675 8134903 ~ 8136194 (-) True AMCG00014297
TU86202 lncRNA downstream 1342511 7874153 ~ 7874358 (-) True G68981
TU86641 lncRNA upstream 121161 9349788 ~ 9355238 (-) True G69352
TU86667 lncRNA upstream 361197 9589824 ~ 9590081 (-) True G69372
TU86668 lncRNA upstream 362549 9591176 ~ 9591381 (-) True G69373
TU86677 lncRNA upstream 666099 9894726 ~ 9895580 (-) True G69382
TU86687 lncRNA upstream 672730 9901357 ~ 9912021 (-) True G69391
AMCG00014326 mRNA downstream 69532 9144538 ~ 9147337 (-) True AMCG00014326
AMCG00014318 mRNA downstream 81482 9131415 ~ 9135387 (-) True AMCG00014318
AMCG00014320 mRNA downstream 131656 9061033 ~ 9085213 (-) True AMCG00014320
AMCG00014319 mRNA downstream 166227 9047304 ~ 9050642 (-) True AMCG00014319
AMCG00014317 mRNA downstream 176824 9030105 ~ 9040045 (-) True AMCG00014317
AMCG00014328 mRNA upstream 76612 9305239 ~ 9316906 (-) False AMCG00014328
AMCG00014331 mRNA upstream 130220 9358847 ~ 9367036 (-) True AMCG00014331
AMCG00014333 mRNA upstream 144829 9373456 ~ 9418236 (-) True AMCG00014333
AMCG00014332 mRNA upstream 238697 9467324 ~ 9472259 (-) True AMCG00014332
AMCG00014340 mRNA upstream 772507 10001134 ~ 10017444 (-) True AMCG00014340
TU86412 other downstream 832645 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 1058279 8156229 ~ 8158590 (-) True AMCG00014298
TU86293 other downstream 1077743 8137331 ~ 8139126 (-) False AMCG00014297
TU86071 other downstream 1793578 7417598 ~ 7423291 (-) False AMCG00014278
TU86038 other downstream 1836089 7378088 ~ 7380780 (-) True AMCG00014271
TU86630 other upstream 81824 9310451 ~ 9317167 (-) True AMCG00014328
TU86854 other upstream 1568089 10796716 ~ 10798147 (-) True G69537
TU87063 other upstream 2431394 11660021 ~ 11662493 (-) False AMCG00014374
TU90285 other upstream 19101112 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 20160663 29389290 ~ 29398305 (-) True G72477

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00062737 False 2267 mRNA 0.42 6 NC_007117.7 29217392 ~ 29227487 (+)
grasscarp (Ctenopharyngodon idella) TU470365 False 2275 lncRNA 0.42 6 CI01000300 1772091 ~ 1784816 (-)
rainbow trout (Oncorhynchus mykiss) TU1087 False 2487 lncRNA 0.48 3 NC_048565.1 2098487 ~ 2101039 (+)
bowfin (Amia calva) TU1087 True 5541 lncRNA 0.40 2 CM030121.1 5550745 ~ 5556306 (+)
tiger barb (Puntius tetrazona) TU1087 True 254 lncRNA 0.47 1 NC_056699.1 3285949 ~ 3286202 (+)
mexican tetra (Astyanax mexicanus) TU1087 True 438 lncRNA 0.31 4 NC_035897.1 2523317 ~ 2526196 (-)