RNA id: AMCG00014327


Basic Information

Item Value
RNA id AMCG00014327
length 5801
RNA type mRNA
GC content 0.47
exon number 19
gene id AMCG00014327
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 9328690 ~ 9361176 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tatcTCAGGAAGAAGAGAATTTGTCCAAAGATTAAAACTTGAAGCAACCCTTAATGTGCATGATGGTTGTgtaAATACAATATGCTGGAATGATACGGGAGAATACATTTTATCAGGATCTGATGATACCAACCTGGTTATAACCAACCCCTACAGCAGAAAGGTCAAAGCCACCATTCGTTCAGGGCACAGGGCAAACATATTCAGTGCCAAGTTTATGCCACACACCAATGATCAACAGATTATTTCCTGCTCAGGAGATGGAATCATATTctatacaaacacagaaaagagCCCAGAGGTCAACAGACAGTGCCAGTTCACCTGCCACTATGGGACAGCCTATGAGATCATGACAGTCCCAAATGACCCCTATACTTTCCTGTCTTGTGGAGAGGATGGGACTGTTCGGTGGTTCGATGTCCGAATGAAAACCAGCTGCACAAAAGAAGAATGTAAAGATGACATTCTTATTAATTGTCGGCGTGCTGCTACCTCGATCTCAATCTGTCCTTTGGTCCCCTATTACCTAGCAGTGGGTTGTTCAGACAGCTCTGTTAGAATATATGACCGGAGAATGCTAGGCACAAGAGCAACAGGCAACTACATGGGCCGAGGCACGACAGGGATGTGTGTGCGCTTTGTCCCGGCTCACCTCTCCAACAAGTCTTGTCGTGTGACGTCCCTGTGCTACAGTGGAGACGGCCAGGAGATCCTGGTCAGCTACTCTTCGGACTACATCTATCTGTTTGACCCCAAAGATGACCAGGCACGCGAGCTGAAGGGGCCttcagaggagaggagggaagaGCTGCGGCAGCCTCCGGTGAAGCGACTGAGACTACGGGGGGACTGGTCAGACACGGGGCCGAGGGCGCGCCCCGAGAGCGAGCGCGAGAGAGACGGAGAGCAGAGTCCCAATGTGTCCCTGATGCAGAGGATGTCAGACATGCTGTCTCGATGGTTTGAGGAGGCCAGTGAAGTGGCCCAGAGCAGCAGGGGTCGCCCACAGCCACGGCCTCGGGgCACCACAGCTCGCCCCGAAGTGGCCTCGGCCAACCCGGAGCCAGCCGCCCAGGAGCAGAGGTCGTCGGAGGGGTCAATGGAGGTCGAGGCTGCGGCTGAAGCGCTCCCCAAGTCCGCCTCTTCGTCCTCGTCCTCTGGCTCCTCTTCCACATTGACTGCTCCTGCCCCCTCTACCTCCTCGTCCACTGAGAGTCCCCCCTCCTCGTCCCTCCTCTCGTCCCCTGACGCCGAGCAGCGGAGCCAGCCTGCGGCCCCCTCGCAGCCAGAGACGGCACAGTCTGAGCCCAGGCGTCGTGGGGTACCGGTAAGTGTAGTGTGTAGGCGTTTACAGCGGCTGCTTCTGATGCCTGACCCTCCGGGACGGAACGAGCgcccgcccccccgccccgcccccGAGCGACCCTCTCCGGGGGCAGACGCACAGCCCACCCCCCCTGCAGGCAGTTCAGAAGGTGCCAGTCCCCGCACTGGGACAGGGGAGCCAGTTCTGAGTTTGCACTATAGCACCAAGGGCACCACGACCAGCACCATTAAACTGGACTTCACGGACGAGTGGAGCAGCACTGCCTCCAGCTCCAGAGGTAGTGGTGGCCACAGCAAGCCCGCAGAGCAAGAGGACTCCACGAAGATGCAGAGAAGAGAGGAGTCGGCACCGGAGAGCATGGAGGCAGCGTCTGCGCTGGCCGTACAGCCCGAGCCACAGGAAACTGGCAGTGTGGAGCAGGCTGGCGACCGCAGCACAGAAAAGGCCTCCTCCAGCACTCGGGACAGTCCTGTGACCGAGCCCCCCGCAGAACCACTCCCGGCTGGAGAGAGCGCCTCTTCCCCAGCGCTGGAGGCGCAGCAGGGGGCGGCTGTGGAAAACCCCAGCCAGTCGTGCCGGCGAACCGAACCGGCGGGAGAAAGCAGCGGGGAGCAGCCCTCGCGCAGCTACCAGGACTCGGATGACAGCGACGACGACCCCATTTTAATACCTTCAGCAAGGTATCGTGCAGGACAGGGGCAGAGGGACTGTGCAAATCTTCAGGATGGGGATTTCCCTATAGAGGCCCACATAAGTTTGATGCGCTCCGCTGCTGCCCGCATCCAGGAGCTCTtcaggaggaggaaggagaggcGCGAGATGGAGGAGAGCGAGACCCAGAACATCAGGAAGCCCACCGTCAAGATGGTCTACAAAGGCCATCGCAACTCCAGAACAATGatAAAAGAGTCCAGTTTCTGGGGGAATAACTTTGTGATGAGTGGCTCTGACTGTGGGCACATCTTTATCTGGGATCGGCACACAGCTGAGCATCTGATGCTGCTGGAGGCTGACAATCATGTGGTGAACTGCCTTCAGCCCCACCCCTTTGACCCCATTCTGGCTTCATCCGGAATAGACTATGATATCAAGATCTGGTCACCCCTGGAAGAGTCTCCAGCTTTCAACCGGAAGCTCGCCAAGGAGGTAATCACCCGTAACGAGCTGATGCTTGAAGAGACGAGAAACACAATCACAGTCCCGGCCTCTTTCATGCTGCGGATGCTGGCTTCACTAAATCACATTAGAGCAGACCATTCGGAGGGCGATCGCTCAGAAGGTTCTGGTCAAGAAAATGAGAACGAGGACGAAGAGTAGCCATTTTGATTTTTGCTACAAAGCACTTGAACATTGAGATTTGTACAAGTAAACTAGAATATTTTCCTTACAGAGCATTAGTGCAATTTTTagctttatttcttttctttttttccttttttctttttttaagaacataacTTTATTACTAATGTTTCCTTGTGGACGAATTGCAtttggagaaagagagaaaaaaaaaaaaaaaaaaaggtgtgaaTGCAAGCTGTGGCAATCTAACAGTGGAAATGAAAAAAGATTTGGATGACCGGCGCTGGCGGATATAAAGTGCAATATTCTTTTTCAAGAGAAAATGTTTGAGCTTGGATCAATGTTAAAGAGTGAGTTTTCATTAATGTAGCGAAGGGaaaagaaatcaaaactttgtatACTTGCTGTTGTgcatgcagatttaaaaaaaggataaataTGATGCTTTTCAAGTAAACAATTTTGTTGTTTAAAGAGTTAGTGACGTTTCATTATCAAGGATAATCAAGGATTCCCTCAGATGGGTCAGATCTCCCTGTCcgaaaaaaaacagagaaccAAAGATCAAAGATGAACTGTTACGTTCAGCTATTGAATGCCTTATTCACACTACAACACCACCTGTCAGCAAAGGAAGGTATCCTTTCTTTTGTGGCCTACAATTAAACCATTTGAAAGAGTGATATCCAACCACAATTTTCAAAATGGTCTTGTTCTGTTAGCATTCTCCTACTACTAGTAGAATCCTCTAAGGAGTTTCCTCTAAACTTCACAGGAGttacacaacaaaaaaaggcacaaatgatttgagtattttttaatacaatataaaaaaatgaggggaaaacagactaacaatattaaaatactgcttttaaaagcacaaaactAGAATAGTTTACATGACCTACTTGATTGAAGCCTCTCACTGCTTCCGTTTCTCAGTCCCAAGATGCAgtaacatttcatttcagcagtttccagaaaaaacaaatgtttaataaatccGATGAATACTATATTACTCAAATACAGTACTTTACAGCATGTGGCATCAGTAACCACGATAGGACAAGACCCCAATGGAGTCTTCTACGCCTAGTAAGATACCGGTTTGCACACAGGATCCaggaaacttattttaaaaccgAAAACACTGTGGTTATTAAAGCTTAAACAGTAATCATTTGTTGGGAACCGTAAATGGAAAGAAGTACAAATTCCCAATATTTTGGTCGGCCTTTGAAGAATTTGGAATGCTGACCTGCTTCCTTTCGAATTCCTGGATGAACTGATGACCTCGGCTCTATGAGGCAATTGAAAGTGTCCGAAGGAGCAAAACGCTGAATACTGCATCCTCAAGTGCAAACGTACCGACACACTTCACAGGTTCTACAGATAAAATTCAACTTGGtcttacattttcaacaccaCTGCATGGATAATATATTTCCTTATATATTCATGGCAACCGTACTaatttgtggtttaaaatgGTAGTACCTTATGCTCTACTTTAAGCTTCAATATACACATGATGTAGTTGCATATTTCACTTGAACACTTGTTGTTCTGGAAGTTAAAAATACTGCATATGATTCTCCAAAATAGAAACTTCTACCACATGTATGAATACATGAAAGTACTTTCATGTATGAATACATGAAAGTACTTTGTTCAATAGTAAGATCTGCACTTACTGATTTTATGAGTGGAGGGCGAgaatttcacacacattttcacacacgGGCTTACATCACGTCCAACTATAGTCTcggtttcaaatgttttattttcctcatgtaACAAAACTACAAAGATGATTCAGGATCTGAGCACCTCTACAGCACACGGAAATCTCCACAGAGGAAACTCATAATAGTGATTAATTTCAGGCACAGATTTCTTCGATTTCATCTTCGTCCTCCTCATTCCCGTCATTTACTATTCCTTCATCGATGCTCTCCAGCCTCAGTCTCTGCCCATTGAGGTACCTGGGCCCTCTCTGCGTGCCCCCTGTGATGCCCGGAGCGGTCCGCAACGCAAACAGGCTGCCCGGCAGGGTCTCGTCCCCAAACAACAGGAGCTTGGCATCAGTCTCGATGGCTTTGGCAAGGCAGGAGGCGTAGCTGTCCAGGGACTTATGAATCTCTGCCTTCACTTGGACTGTGGAAGGAGTGgaattttctaaaaaaaaaaaaagaaattagcTTTAGAATTCAGATTGAGTAGctgacatatttattattaaatcgCTTAAAAAGGAAATTTTCTATAGCCATAACATGAATAATTATTTGACACACATGTATAAGGCAGACAGTAACAGCTCTGCCTTCATCTGAAATGCCTCTGGTATGAATTTCCACACAGGAATATCCATATTTCTTGAATCGTGAGTAGAGGGTGTCTTCAGGCAGTCGGGCAACTAATGGAGATACCTTTGGAGTGTTGCTCCAGCTGGTCCTCAAAGGTCACCGAGCTCCGCCGCTTGCCGGAGGCCCCCCCGTGGTGCGAGGCATGCGTGCCGTCTGACGTGAAGTCATCCAGCAACATGAGGTCGGTACCTGCAAGAAATACACTCTTTAGATGAGACCAGACACCAGAGCCTGTTTATTCAGGTGCCAGTGAAAGGTGCCGACACATTCATTCTGGTTTACTCATAATCACAGGTAGCCATTTTCCTTAAAGTTAATAGCAAGGCTACACATTCTCCACATCCCATTTACAGTCATAAACCCGACCCTACTATTTACACATTCTTCAGCATGATCTGTACAGATTGATTCTGAATGAATTCTGCTCAAAACAGAATACAGTGAACACTGCAGTATCACAATACAGGAGAGGACTGCAGCATTGAAGCAGTGAGGCTGACAAATGACCTCCGATAGCCAAGCATAACAAAGGCCCCGAGGCTACTGCCATGAAACCGACAAGTCTGAGCTCCTGCAGTGATTCAAAGAAATGTTTGCCTTAACAAGCATAGATGCATGAGAGTTGTGATGAAGTGGATTCGAAGGTCACAGTTTTCAGATTCCCTAAAGGGGAGGATCCCTTTTGCATAACTAAGTGTTCTGACAACCAAGAACCTTTATACTCTGTAaagatatattttgaaatgtctcaTTGCTATAACTTCATCAATAAAAGAAATTACATGATA

Function

GO: NA

KEGG:

id description
K11795 DCAF6, IQWD1, NRIP, ARCAP; DDB1- and CUL4-associated factor 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86492 lncRNA upstream 437856 8890586 ~ 8890834 (+) True G69232
TU86463 lncRNA upstream 592751 8734323 ~ 8735939 (+) True G69206
TU86247 lncRNA upstream 1192480 8133288 ~ 8136210 (+) True G69023
TU86229 lncRNA upstream 1313687 8014744 ~ 8015003 (+) True G69006
TU86203 lncRNA upstream 1453948 7874527 ~ 7874742 (+) True G68982
TU86614 lncRNA downstream 5361 9366537 ~ 9376350 (+) True G69326
TU86679 lncRNA downstream 540274 9901450 ~ 9910048 (+) True G69384
TU86698 lncRNA downstream 613248 9974424 ~ 10028351 (+) True G69400
TU86728 lncRNA downstream 693315 10054491 ~ 10054711 (+) True G69428
TU86731 lncRNA downstream 694201 10055377 ~ 10055733 (+) True G69431
AMCG00014324 mRNA upstream 55635 9259294 ~ 9273055 (+) True AMCG00014324
AMCG00014322 mRNA upstream 156628 9157744 ~ 9172062 (+) True AMCG00014322
AMCG00014323 mRNA upstream 184264 9137031 ~ 9144426 (+) True AMCG00014323
AMCG00014321 mRNA upstream 198159 9089874 ~ 9130531 (+) True AMCG00014321
AMCG00014316 mRNA upstream 308057 9004500 ~ 9020633 (+) True AMCG00014316
AMCG00014329 mRNA downstream 82023 9443199 ~ 9458087 (+) True AMCG00014329
AMCG00014330 mRNA downstream 114233 9475409 ~ 9482055 (+) True AMCG00014330
AMCG00014336 mRNA downstream 442781 9803957 ~ 9808880 (+) True AMCG00014336
AMCG00014337 mRNA downstream 479847 9841023 ~ 9908262 (+) True AMCG00014337
AMCG00014334 mRNA downstream 552949 9914125 ~ 9916789 (+) True AMCG00014334
TU86046 other upstream 1912096 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 1979223 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 4676726 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 4676726 4649200 ~ 4651964 (+) False G68475
TU84898 other upstream 6618361 2709024 ~ 2710329 (+) True AMCG00014146
TU86705 other downstream 641882 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 4975682 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 6314455 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 6314455 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 6768349 16129525 ~ 16132802 (+) False AMCG00014508

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00074547 False 3365 mRNA 0.51 19 NC_007120.7 34166064 ~ 34219365 (-)