RNA id: AMCG00014331


Basic Information

Item Value
RNA id AMCG00014331
length 3030
RNA type mRNA
GC content 0.50
exon number 6
gene id AMCG00014331
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 9358847 ~ 9367036 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCTGGGCTGGATTTGAATCAGctgataaaggaaaaaaaactttgcaaTGAGGAAACATGGAAAGTTGCCACTGTGACCCCGCGAAAGCACCGGGCTCTTCTTTGCGTGTTTTCTCGCCCTTTTCTTCTCGTCTCAGGGGATGGGAGTGAAGCGGAGGTAGGAACTTTTAAAGCAGAGACCGGGAGGCTCCGGTGCACACAAAGGGATCGGGCAGTGTTTTATCTGCGTCCCATGGCTGGAAGTCGGCGTGAGACAGGGGTTTTAGATCAGTTGCCAAGCATGTCTCCCCTTGCTCCACTTCTCCGTCTCCCACAATGAACAGCTGCAGCAATGGGACGTCTCCCACGAACGACACGGCCGGGGGTGGCAGTGGGGTCGTGGTGGTCGAGTCCATCTTTGCCGTCGCCATCACCCTGCTCGTCTTCTTCGGCAACCTGCTGATCGTGGTGACGTTGTACAAGAAGCCCTATCTGCTGACGCCCAGCAACAAGTTTGTCTTCAGCCTGACTCTGTCGAACCTGCTGCTGTCCGTGCTGGTGCTGCCCTTCGTCGTTGCCAGCTCGGTGCGGCGCGAGTGGATCTTCGGGGTGGTGTGGTGCAACTTCACCGCCCTGCTGTACCTGCTCATCAGCTCTGCCAGCATGCTCACCCTGGGCGCCATCGCCATTGACAGGTATTATGCTGTTCTCTACCCCATGGTTTACCCCATGAAGATCACTGGCAACCGTGCAGTGGTGGCTATTGTCTACGTGTGGCTACATGCCCTGTTGGGCTGCCTGCCGCCCTTCTTTGGCTGGTCCACCTTTGAGTTTGATCAATACAAATGGATGTGCACAGCTGCCTGGCACAAGGATGTGAGCTACACGGCTTTCTGGATCTCCTGGTGCACGTTGCTCCCCTTCTTGGCCATGACAGTCTGCTACGGATTTATCTTCAGGGTGGCACGGATCAAAGCCCGTAAGATCCACTGCAGGACGGTGGTCGTGGCCCAGGAAGAGACCTCTTCGCAGAAGAACGGCCGTAAGAACTCCAACACTTCTACCTCTTCCAACGGCAGTCGCAGAAGCAGCGGCCTGGTCTATTCGGGAAACCAGTGCAAGGCCTTCGTGACTATTCTGGTGGTACTGGGGGCCTTCGTGGTGACCTGGGGCCCCTATGTGGCCGTCATCAGCACTGAAACCCTGTGGGGGAAAGGTAGCGTCTCTCCTGGCCTGGAGACCCTGGTGACCTGGCTATCCTTCACAAGTGCCATCTGCCACCCTCTCATCTATGGACTGTGGAACAAGACTGTGCGCAAAGAGCTGCTGGGGATGTGCTTCGGAGACCGCTATTACAGGGAGTCCTTCGTCACTCGCCACAGGACCTCGAGGCTGGTCAGCATCTCGACCCGCATCACTGAGGGCAGTGCAGTGTTTGCCGTGCTGATGGTGTTGTGTATCGCAGATCTGGGGATGTCTCCACATCTGACCGCAATACTGGCAGGAGGAGGACAGATCCTGGGACACGGCAGCAGCACTGGAGACACCGGCTTCAGCTTTTCTCAAGACTCAGGTACCGACCTCATGTTGCTGGATGACTTCACGTCAGACGGCACGCATGCCTCGCACCACGGGGGGGCCTCCGGCAAGCGGCGGAGCTCGGTGACCTTTGAGGACCAGCTGGAGCAACACTCCAAAGaaaattcCACTCCTTCCACAGTCCAAGTGAAGGCAGAGATTCATAAGTCCCTGGACAGCTACGCCTCCTGCCTTGCCAAAGCCATCGAGACTGATGCCAAGCTCCTGTTGTTTGGGGACGAGACCCTGCCGGGCAGCCTGTTTGCGTTGCGGACCGCTCCGGGCATCACAGGGGGCACGCAGAGAGGGCCCAGGTACCTCAATGGGCAGAGACTGAGGCTGGAGAGCATCGATGAAGGAATAGTAAATGACGGGAATGAGGAGGACGAAGATGAAATCGAAGAAATCTGTGCCTGAAATTAATCACTATTATGAGTTTCCTCTGTGGAGATTTCCGTGTGCTGTAGAGGTGCTCAGATCCTGAATCATCTTTGTAGTTTTGTtacatgaggaaaataaaacatttgaaaccgAGACTATAGTTGGACGTGATGTAAGCCcgtgtgtgaaaatgtgtgtgaaattcTCGCCCTCCACTCATAAAATCAGTAAGTGCAGATCTTACTATTGAACAAAGTACTTTCATGTATTCATACATGAAAGTACTTTCATGTATTCATACATGTGGTAGAAGTTTCTATTTTGGAGAATCATATGCAGTATTTTTAACTTCCAGAACAACAAGTGTTCAAGTGAAATATGCAACTACATCATGTGTATATTGAAGCTTAAAGTAGAGCATAAGGTACTACcattttaaaccacaaattAGTACGGTTGCCATGAATATATAAGGAAATATATTATCCATGCAGtggtgttgaaaatgtaagaCCAAGTTGAATTTTATCTGTAGAACCTGTGAAGTGTGTCGGTACGTTTGCACTTGAGGATGCAGTATTCAGCGTTTTGCTCCTTCGGACACTTTCAATTGCCTCATAGAGCCGAGGTCATCAGTTCATCCAGGAATTCGAAAGGAAGCAGGTCAGCATTCCAAATTCTTCAAAGGCCGACCAAAATATTGGGAATTTGTACTTCTTTCCATTTACGGTTCCCAACAAATGATTACTGTTTAAGCTTTAATAACCACAGTGTTTTcggttttaaaataagtttcctGGATCCTGTGTGCAAACCGGTATCTTACTAGGCGTAGAAGACTCCATTGGGGTCTTGTCCTATCGTGGTTACTGATGCCACATGCTGTAAAGTACTGTATTTGAGTAATATAGTATTCATCggatttattaaacatttgttttttctggaaactgctgaaatgaaatgttacTGCATCTTGGGACTGAGAAACGGAAGCAGTGAGAGGCTTCAATCAAGTAGGTCATGTAAACTATTCTagttttgtgcttttaaaagcagtattttaatattgttagtctgttttcccctca

Function

GO: NA

KEGG:

id description
K08439 GPR161; G protein-coupled receptor 161

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86641 lncRNA downstream 3609 9349788 ~ 9355238 (-) True G69352
TU86513 lncRNA downstream 360221 8998426 ~ 8998626 (-) True G69250
TU86493 lncRNA downstream 468008 8890556 ~ 8890839 (-) True G69233
TU86331 lncRNA downstream 1108286 8226494 ~ 8250561 (-) True G69086
TU86291 lncRNA downstream 1222653 8134903 ~ 8136194 (-) True AMCG00014297
TU86667 lncRNA upstream 222788 9589824 ~ 9590081 (-) True G69372
TU86668 lncRNA upstream 224140 9591176 ~ 9591381 (-) True G69373
TU86677 lncRNA upstream 527690 9894726 ~ 9895580 (-) True G69382
TU86687 lncRNA upstream 534321 9901357 ~ 9912021 (-) True G69391
TU86688 lncRNA upstream 534321 9901357 ~ 9912021 (-) False G69391
AMCG00014328 mRNA downstream 41941 9305239 ~ 9316906 (-) False AMCG00014328
AMCG00014325 mRNA downstream 130220 9216869 ~ 9228627 (-) True AMCG00014325
AMCG00014326 mRNA downstream 211510 9144538 ~ 9147337 (-) True AMCG00014326
AMCG00014318 mRNA downstream 223460 9131415 ~ 9135387 (-) True AMCG00014318
AMCG00014320 mRNA downstream 273634 9061033 ~ 9085213 (-) True AMCG00014320
AMCG00014333 mRNA upstream 6420 9373456 ~ 9418236 (-) True AMCG00014333
AMCG00014332 mRNA upstream 100288 9467324 ~ 9472259 (-) True AMCG00014332
AMCG00014340 mRNA upstream 634098 10001134 ~ 10017444 (-) True AMCG00014340
AMCG00014341 mRNA upstream 660616 10027652 ~ 10043566 (-) True AMCG00014341
AMCG00014339 mRNA upstream 691232 10058268 ~ 10061230 (-) False AMCG00014339
TU86630 other downstream 41680 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 974623 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 1200257 8156229 ~ 8158590 (-) True AMCG00014298
TU86293 other downstream 1219721 8137331 ~ 8139126 (-) False AMCG00014297
TU86071 other downstream 1935556 7417598 ~ 7423291 (-) False AMCG00014278
TU86854 other upstream 1429680 10796716 ~ 10798147 (-) True G69537
TU87063 other upstream 2292985 11660021 ~ 11662493 (-) False AMCG00014374
TU90285 other upstream 18962703 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 20022254 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 22896131 32263167 ~ 32263427 (-) True G73047

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073368 True 1702 mRNA 0.48 5 NC_007120.7 34151367 ~ 34162047 (+)
grasscarp (Ctenopharyngodon idella) CI01000024_05125128_05131366.mRNA True 1592 mRNA 0.51 5 CI01000024 5125123 ~ 5131366 (-)