RNA id: AMCG00014333


Basic Information

Item Value
RNA id AMCG00014333
length 3799
RNA type mRNA
GC content 0.50
exon number 25
gene id AMCG00014333
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 9373456 ~ 9418236 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGATTTATAGCTTTAGCCCTTTTTCCTCCTACCGATCGCTTGAAACGATGCTTCAGTGCATACGGATATGAGTACCTCCGCGTGGCTTTCACTATTCGCACTCAACGAATCGGCCTCGCTGTCAGGAGCTGTTCACGCCtccctacacacacagacaccactCCCTCCGAGCAGAGCGAATTGACAGCAGAGACTGAAGAGGACCGGCAGGCACGGCATCCCCCAGCTCCCGTGAAGGTCTGCCCGCTACCGGAGCTGGCCCCCCTCATGACAAGATGTCCGTAAGAGAGCGCAGCCCCCGCCACCGGCCATGGTCCGTGTACCGCGCCAACACCTTCGACCTCTCCTCAGAGATGCTGGGCCTCACTCTGGCAGGCAACAGCCAAGATCCAGACGAGCCAGTTTTAGAGTTTAGTGTTGCTTGCAGTGAATTAATCACACCAGCACTGGATCGAAAACCAAATAGTTTTGTTGCAGTCAGTGTCACTACACCACCCCAAGCATTCTGGACAAAACATGCCCAGACAGAGATAATAGAGGGCACAAGTAACCCCATATTCCTGAGCAGCATTGCCTTCTTCCAGGACTCGCTCATCAACCAGCAGACCCAGGTGAAGCTCTCTGTGTATGATGTCAAGGACCGGTCTCAGGGCACGATGTATTTGCTGGGGTCTGCCATGTTCCCAGTGAAAGAACTATTGCAAGAGAAGCAACACCGGCTACACTTAATGCTAAGATCTGCTGAGAATGAGCGAGTGGGCAACATCACCATCATAGCCTGGCAGATGGAGGAGAAAAGAGACCAAAGGGCTCCGGTGCCAAGGCTGCCTGATACCATCAATGGAAGGATGGTACTCCCGGTTGATGAAAGCCTGACAGAGTCTTTAGGAATCAGAGCAAAATATGCGTCTTTGTGCAAGGATACATTATTGAAATCAGTGTTCGGGGGCACCATGAGCCGAATGTATCGCTTCCCCACCACGGACGGCAATCACCTGCGCATCCTGGAGCAGATGGCGGAGAGCGTGCTTTCTCTGAATATACCTCGCCAGTTTGTCAAGCTCCTTCTCGAGGAAGACGCTGCTAGAGTCTgtgagctggaggagctggggGAACTGTCTCCCTGCTGGGAGAGCTTGCGGCGGCAGATTGTCACTCAATACCAAACCATCATCCTCACCTACCAGGAGACCCTGACAGACCTCCACCAGTACAAAGGGCCCTCCTTCAAAGCCAGCAATCTGAAAGCAGAAAAGAAGCTAGAATTCATGCCAACAAACCTCCATATCCAGAGGATGAGAGTGCAGGATGAATCTGGCTCGGATCACACATATGACATTGTGACGATCGGAGCTCCAGCCGCACACTGCCAGGGCTTCAAAAACAGTGGCCTCCGGAAGCTCATCCACAAGTTTGAAGAGGCCAAAAAGCACGCTGTGTCCAGCTCGCAGTCCATTGTCTACATCCCTCAGGACATTGTCAGAGCCAAGGAGATCATCGCACACATCAACACCCTGAAGACACAGGTCAGCTACTACGCCGAGAGGCTCTCCAGAGCAGCCAAGGATCGCTCTGCCAATGGGCTGGAGAGGACCCTTGCCATCCTGGCAGACAAGACCAGGCAGCTGGTTACAGTGTGCGACTGCAAGCTTCTGGCAAATGCGATCCAGGCCTTGAACGCGGCTCGACCGGAGTACATCGCCTCGAAAGCTTCACCCACGGCTGGGGACGTCGATCAGGTGATGCTGCGGAATGACCAGGACACGCTGGTGGCCAAGTGGACTGGGAAGAACAGCCGCTCGTCATTGCATGTCAACTGGCACGAGGAGGAATGGGAGAAAGTGTGGCTCAATGTTGACAAGAGCCTGGAGTGCATCATTCAGCGTGTGGACAAGCTGCTGCAGAAAGACCGGCTGCAGAGTGACAGCTGTGAGGACGTGTTCCAGTGCGACCTCAGCAGCTCCAGCAAGAAAGATTGCAGCTCCCCCGCTGAGGAGGCCACCCCAGGGGAGTGGAGTGAAGCCTTGTATCCTTTGCTCACAACTCTCACCGAATGTGTAGCTATGATGAGCGATAAAGCTAAGAAATCGATGGTGTTCCTGCTAATGCAAGATACCGCACCAACCATCGCGATGGACCTCAGCCTGCAGTATCGCAGGGATGTGGTCTTCTGTCAGACGctgaCTGCCCTTATTTGCGGATTTATCATCAAGCTGAGAAATTGCCTTCGTGACGATGGCTTCTTACGTCAACTTTATACCATTGGCCTCCTTGCGCAGTTTGAGAGTCTACTAAGTACctatgGGGAGGAACTGGCCATGCTGGAGGACATGAGCGTCGGAATCTTGGACCTGAGAAATGTGACGTTCAAGGTGACCCAGGCTACCTCCAGCTCCTCGATGGACATGTTGCCAGTCATCACAGGGAACAGAGACGGGTTTAATGTGAGGATTCCTCTGCCGGGGACCATGTTTGATGCGCTGCCACGGGAGATCCAGAATGGGATGCTGCTGAGAGTCCAGCCCGTGCTCTTTAACGTGGGAATCAACGAACAGCAAACCCTCGCTGAGAAGTTTGGAGACACGTCATTGCAAGAAATCATTAACATGGAGAGCCTGGCTCGCCTGAATTCCTATTACGAACAGTTCAAAGAAGTTTTACCTGAAGATTGTCTACCTCGATCACGCAGTCAGACGTGCTTGCCTGAACTACTGAGATTCCTGGGCCAGAATGTCCatATCTGCCGTCGCCTAAATGGGGTTCGCTTCACGAGTTGTAAAAGTGCCAAGGACAGGACGGCCATGTCTGTGACCCTGGAGCAGTGTCTCATTCTGCAGCATGAGCACGGCATGGCCCCCCAGGTCTTCACACAGGCGCTGGACTGCATGCGGAGTGAGGGTTGTCGGCGGGAAAACACCATGAAGAATGTGGGATGTCGCAAGTATGCTTTTAACACTCTGCAGTTGAAGGCTTTTCCAAAACATTACAGGCCTCCGGAGGGAACCTATGGGAAGGTTGAGACTTGATAGGACGCctcagacacattttaaaagcaacaaatgCCCGTTTGTGAAATGCAGTTCACTGTTAAAATGATAGGTGTGAAAGTTCTGTGatctatatatactgtatatataatttaaatacaaccaCACTCACCTGCAACTCAACAAGACCAGTAGAAACATATCAGCAAGTCTGTTTTAAGGTCTCAACACAATAAGTCATTCCACTGTCCATGGAAGAATATACTGTAGGTAGAGCATGCTTTCTCAGATTTAGAGGACAAAAAATAACCCTTGACTGAATACCAGTTTAGTGTATGTTCGCACATTGACACAACAGTCCTTTcataagaaaaagaaaccagCATTGTGGTTGTCGAGGAAAACACATTCATGACAATGCACCCACATTAGTGGATAATCATAGACATATCGAATGCTAACATATCGAATGCTTGGGTAGCTCTGCAGAAACAATGCTTTATGTATGAAGATCTAGGATCGCACTGAGATTAGCAGCACAATCATATCACAGGGTTTTGCATCAATTATCATTGAGAGTTTACACACCACCGTCTGTAAAGTACATGCAGTGCAACTATTTCAGGTTAATAGTTATGGATACTTTTGTACGTAAGCTGCTTTCATTTTGGTAGATGCAGTAACGTGTAGTGTCCAATATATCCAAATACAATTAATGAGaatatttctgtgtatttgtgtgtatatatgtgtatgtgtatgtgtatgtgtgtgtgtgtgtgtgtgtatatatatgtatatgtgtgtgtat

Function

GO: NA

KEGG:

id description
K01109 INPP4; inositol polyphosphate-4-phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86641 lncRNA downstream 18218 9349788 ~ 9355238 (-) True G69352
TU86513 lncRNA downstream 374830 8998426 ~ 8998626 (-) True G69250
TU86493 lncRNA downstream 482617 8890556 ~ 8890839 (-) True G69233
TU86331 lncRNA downstream 1122895 8226494 ~ 8250561 (-) True G69086
TU86291 lncRNA downstream 1237262 8134903 ~ 8136194 (-) True AMCG00014297
TU86667 lncRNA upstream 171588 9589824 ~ 9590081 (-) True G69372
TU86668 lncRNA upstream 172940 9591176 ~ 9591381 (-) True G69373
TU86677 lncRNA upstream 476490 9894726 ~ 9895580 (-) True G69382
TU86687 lncRNA upstream 483121 9901357 ~ 9912021 (-) True G69391
TU86688 lncRNA upstream 483121 9901357 ~ 9912021 (-) False G69391
AMCG00014331 mRNA downstream 6420 9358847 ~ 9367036 (-) True AMCG00014331
AMCG00014328 mRNA downstream 56550 9305239 ~ 9316906 (-) False AMCG00014328
AMCG00014325 mRNA downstream 144829 9216869 ~ 9228627 (-) True AMCG00014325
AMCG00014326 mRNA downstream 226119 9144538 ~ 9147337 (-) True AMCG00014326
AMCG00014318 mRNA downstream 238069 9131415 ~ 9135387 (-) True AMCG00014318
AMCG00014332 mRNA upstream 49088 9467324 ~ 9472259 (-) True AMCG00014332
AMCG00014340 mRNA upstream 582898 10001134 ~ 10017444 (-) True AMCG00014340
AMCG00014341 mRNA upstream 609416 10027652 ~ 10043566 (-) True AMCG00014341
AMCG00014339 mRNA upstream 640032 10058268 ~ 10061230 (-) False AMCG00014339
AMCG00014346 mRNA upstream 774393 10192629 ~ 10197751 (-) True AMCG00014346
TU86630 other downstream 56289 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 989232 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 1214866 8156229 ~ 8158590 (-) True AMCG00014298
TU86293 other downstream 1234330 8137331 ~ 8139126 (-) False AMCG00014297
TU86071 other downstream 1950165 7417598 ~ 7423291 (-) False AMCG00014278
TU86854 other upstream 1378480 10796716 ~ 10798147 (-) True G69537
TU87063 other upstream 2241785 11660021 ~ 11662493 (-) False AMCG00014374
TU90285 other upstream 18911503 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 19971054 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 22844931 32263167 ~ 32263427 (-) True G73047

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU199518 True 2479 lncRNA 0.50 20 CI01000037 2031546 ~ 2060079 (+)