RNA id: AMCG00014334


Basic Information

Item Value
RNA id AMCG00014334
length 2106
RNA type mRNA
GC content 0.45
exon number 3
gene id AMCG00014334
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 9914125 ~ 9916789 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCACGGCGGCTTCCAACCCTTACCTGCCCAGCAACAGTATCCTCTCATCGGGTTCAATTGTGCATTCTGATTCGGGAGGGGGTGGCATGCAACCTGGCAGTGCCGCCGTTACCTCGGTGTCTGCCGGGTACAGAGGAGACCCCTCGGCTAAGATGGTACAGAGCGACTTCATGCAGGGAGCTATGGCGGCAAGCAACGGGGGCCATATGTTGAGCCATGCCCACCAGTGGGTAACAACTCTGCCTCACgccgccgctgctgctgctgcggccgCCGTGGCAGCAGCAGAAGCCGGATCGCCTTGGTCGTCCAGCCCCGTCGGGATGACGGGAAGcccacaacagcagcagcaggacgTCAAAAACAATTCGGGCAGAGACGATCTGCACACGGGGACTGCGCTGCACCACAGGCCCCCTCACCTGGGTCCCCACCAGAGTCACCCAGGGGCTTGGGGGGGGACCACCGCTTCTCACATCCCTTCAATAGCCGggggacagcagcagcagtctctCATATACTCGCAGCCCGGAGGGTTCACGGTGAACGGGATGCTAAGCCCGCCGCCAGGGAGTCAGAGTCTGGTGCACCCCGGTTTGCTGAGCTTCAAGAACATGTGCAAACTCAAGCCCCTGCTCAATAAATGGCTGGAGGAAGCCGACTCGTCCACCGGGAGCCCGACCAGCATCGACAAGATAGCGGCGCAGGGCAGGAAGCGAAAGAAGCGCACCTCCATCGAGGTCAGCGTCAAGGGGGCATTGGAGAGTCACTTCTTGAAGTGCCCCAAACCCTCGGCCCAGGAGATAACCTCTCTAGCGGACAGTTTGCAGCTGGAGAAAGAAGTGGTCAGAGTTTGGTTTTGCAACCGGAggcagaaagagaaaaggatgACCCCCCCGGGAGTGCAGCAGACGCCGGACGAGGTGTACTCTCAGGTCGGCAATGGACATTTTTTAGTAGATTACTTAAAAGATGCAAGTTTAACTGGGCCGAATCAGCCGAGTGACCAGAGGGTGACAACTACAAGTTCATTCCACCAGGTAATCTTAGCGCACTAACAACATCAACACAAAACCCCATTCAAGTGTAAGAAATGATATCTTTCTAGCtatctatattttttctgtatttggtaTGTTTGAGACAACAGAAGCAGGCATTAAAGCAAGCACTAAACAAAAATGGACTGTAAAAGTGAAGGAGtccaacagaaacaaaaatgtgacaacAACACAATGAAGAGGAGTTGGGATCCACAAAGCTGCAAACGTGTTTTAAGAAGAGGACTGCATGGTTTAatataaaggagaaaaaagggaTTGGGGTTGTTAGACACTTTCTTAAGACTTTGGCCCTATTGATCTCAAAGATCACATCTTTTgaagattgtattttattttgtggacCGTTCCCCGTAAatggattttttaaaaacaaaacaaaaaagactgaTCTGCAGCTGCACTTACCTGAAATCCTCCTCTGCGAAACCCGGTGCCAAGTGGGACTGAATGGGTGCTGTGGATGTAACTAAATAATGCTGCCATTTcccagcagtgtttttttggtAGGTTTTAATAAACAGACTTTCAAAGCTGGCAATATAGATTCATTAGATCAGATTCTGAtcttaaatatttactttatatttttcatcaaaatgacttgttttaatattttattcagaataACTATGGACTGTTACAAAcggtaatttattttttccccagatcttgtataacgtgtttttttctttggtttgtttatttcgttgtccttttttttttttttttattattattattttcaaacgAGCACAAATCAAAAGAAACTGATGCTATGGACAGTTGTTAGGTAATAAGGGTATATTTTGATGTGATAATttgattgtaatttaatttgagtaGTATTCCGTAAGAGAtgattgagaaaataaatttgTTAGAATGAAATGCCGTGGTTGTGTGTGGTGCATATGATAgtgcagatttatattttaaatacagaattacactaaaatttatatttttattgcaattCTTATTAAAACgctaaatatataatgaaaacttGTGTTTTCAATCATGCTATGTCAATTGTGt

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86679 lncRNA upstream 4077 9901450 ~ 9910048 (+) True G69384
TU86614 lncRNA upstream 537775 9366537 ~ 9376350 (+) True G69326
TU86492 lncRNA upstream 1023291 8890586 ~ 8890834 (+) True G69232
TU86463 lncRNA upstream 1178186 8734323 ~ 8735939 (+) True G69206
TU86247 lncRNA upstream 1777915 8133288 ~ 8136210 (+) True G69023
TU86698 lncRNA downstream 57635 9974424 ~ 10028351 (+) True G69400
TU86728 lncRNA downstream 137702 10054491 ~ 10054711 (+) True G69428
TU86731 lncRNA downstream 138588 10055377 ~ 10055733 (+) True G69431
TU86745 lncRNA downstream 231190 10147979 ~ 10151913 (+) True AMCG00014345
TU86759 lncRNA downstream 306882 10223671 ~ 10224035 (+) True G69457
AMCG00014337 mRNA upstream 5863 9841023 ~ 9908262 (+) True AMCG00014337
AMCG00014336 mRNA upstream 105245 9803957 ~ 9808880 (+) True AMCG00014336
AMCG00014330 mRNA upstream 432070 9475409 ~ 9482055 (+) True AMCG00014330
AMCG00014329 mRNA upstream 456038 9443199 ~ 9458087 (+) True AMCG00014329
AMCG00014327 mRNA upstream 552949 9328690 ~ 9361176 (+) True AMCG00014327
AMCG00014335 mRNA downstream 42444 9959233 ~ 9981593 (+) True AMCG00014335
AMCG00014338 mRNA downstream 76884 9993673 ~ 9994671 (+) True AMCG00014338
AMCG00014343 mRNA downstream 98714 10015503 ~ 10071601 (+) True AMCG00014343
AMCG00014342 mRNA downstream 208365 10125154 ~ 10145702 (+) True AMCG00014342
AMCG00014345 mRNA downstream 231663 10148452 ~ 10151030 (+) False AMCG00014345
TU86046 other upstream 2497531 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 2564658 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 5262161 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 5262161 4649200 ~ 4651964 (+) False G68475
TU84898 other upstream 7203796 2709024 ~ 2710329 (+) True AMCG00014146
TU86705 other downstream 86269 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 4420069 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 5758842 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 5758842 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 6212736 16129525 ~ 16132802 (+) False AMCG00014508

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00062512 True 6608 lncRNA 0.38 2 NC_007117.7 14950471 ~ 14957388 (+)
grasscarp (Ctenopharyngodon idella) CI01000024_00913269_00915063.mRNA True 2332 mRNA 0.48 3 CI01000024 912852 ~ 915565 (-)