RNA id: TU86723


Basic Information

Item Value
RNA id TU86723
length 1211
lncRNA type sense_over
GC content 0.44
exon number 2
gene id AMCG00014340
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 10001134 ~ 10017751 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACACATTTTCACCATTTTCATTAAGTTTGCAGGCATTTGTGTGAAAATAGTAATTTCCCAGCTTTCCCAAGATTCATGTGAACCTGGTTACTACCTCAGAACTAAAAAATTGCATATCGAGAATGTGGGGATATTAACTTCACTTACTGCGTCTTCAGACTCTCCCTCTTTGGGCGCTTGTCGTTTTAATTTGACCACCGCTGTGCCTCCTGGGGGAGATGTGGGTGGGGGCGACATTCCGTTTCCCGAGGGACTCCTGTGAATGGGTGCTTCACTGCATTGCTTTTCTGTTGCCCCACTCACAAGGTCGACAGCACTCCTGTTGGAGCCATCTGAAGAGGAATTGGTCGATGAGCCCGACAGTCTGCGAATGGTGTTGGTAAGGTTCCCCGACGGAGGTGGCTTCAAGCGGTCCACCGGTCCAGAGCCATCGTCTGCCTTCTTTAGTTTTATGCTAGTGCTTGTGGAGCTGCCATCAAACACAATCAGGGGTCTTTTTCTAGAGCTTTCACTCCAAGAACTAAAACAAAGACCCAAAAGACAGACCAATTCAATTCAGGCAAAACAGTAAACACTTTTCATACCGTAAAAATCTTACATTCGcactttaaaacaattgtattaatgcatataaaatatgaatgctttCTTCACCTAGAATTAGTTTACTATGATTAATCATAAATTCAAACATTTCCCACACAATGAATAGCAAATGTGTCATAATGTATTCTATGCTACTgagaaataaactgaacaaataaGGGAGAGTGCTACTGCAATGAATCAGTCATGTAATGTTTGTTCTAAAGCACACTGTGAGTTTAAAGAAGATGGAcgaattacaaaaaatatatacatctgaTTTATGCAGACATTAAACAGGCATAAGCAGTACTGCACCAGCGTTTCTGTGAATTTGTTGCAGACTGGCACGCTCTGCTCTTCTGCATCCTTCTCCCCCAGCGGCTGTTGGGCAGGGCCCTTTGAGGCAGAGGAATGACATGCTGAAGGTACAGCTCTGTGAGGCAGTCTCTGTTGGCAGCCTTCTCATTTTCAACAGggatttttCTCTTGTAGTGTAAGAAGTAAAAAATCCCGAGAGAGCAATTCGGGGTGCAACAGGAGATCTAGATTAGCCCCGCTTTTGCCGATATGTGCACCTTTCCCTCCACTCAAATTGCAACCATCCGCCATTTTCATCTTCGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86693 lncRNA downstream 80092 9935175 ~ 9935398 (-) True G69396
TU86691 lncRNA downstream 98155 9916845 ~ 9917335 (-) True G69394
TU86687 lncRNA downstream 103469 9901357 ~ 9912021 (-) True G69391
TU86688 lncRNA downstream 103469 9901357 ~ 9912021 (-) False G69391
TU86677 lncRNA downstream 119910 9894726 ~ 9895580 (-) True G69382
TU86727 lncRNA upstream 35986 10053737 ~ 10054275 (-) True G69427
TU86735 lncRNA upstream 40346 10058097 ~ 10061092 (-) False AMCG00014339
TU86736 lncRNA upstream 40346 10058097 ~ 10061092 (-) True AMCG00014339
TU86793 lncRNA upstream 320136 10337887 ~ 10340946 (-) True G69483
TU86807 lncRNA upstream 402429 10420180 ~ 10479009 (-) True G69495
AMCG00014332 mRNA downstream 543231 9467324 ~ 9472259 (-) True AMCG00014332
AMCG00014333 mRNA downstream 597254 9373456 ~ 9418236 (-) True AMCG00014333
AMCG00014331 mRNA downstream 648454 9358847 ~ 9367036 (-) True AMCG00014331
AMCG00014328 mRNA downstream 698584 9305239 ~ 9316906 (-) False AMCG00014328
AMCG00014325 mRNA downstream 786863 9216869 ~ 9228627 (-) True AMCG00014325
AMCG00014341 mRNA upstream 9901 10027652 ~ 10043566 (-) True AMCG00014341
AMCG00014339 mRNA upstream 40517 10058268 ~ 10061230 (-) False AMCG00014339
AMCG00014346 mRNA upstream 174878 10192629 ~ 10197751 (-) True AMCG00014346
AMCG00014348 mRNA upstream 223255 10241006 ~ 10256375 (-) True AMCG00014348
AMCG00014349 mRNA upstream 282252 10300003 ~ 10301361 (-) True AMCG00014349
TU86630 other downstream 698323 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 1631266 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 1856900 8156229 ~ 8158590 (-) True AMCG00014298
TU86293 other downstream 1876364 8137331 ~ 8139126 (-) False AMCG00014297
TU86071 other downstream 2592199 7417598 ~ 7423291 (-) False AMCG00014278
TU86854 other upstream 778965 10796716 ~ 10798147 (-) True G69537
TU87063 other upstream 1642270 11660021 ~ 11662493 (-) False AMCG00014374
TU90285 other upstream 18311988 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 19371539 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 22245416 32263167 ~ 32263427 (-) True G73047

Expression Profile