RNA id: AMCG00014341


Basic Information

Item Value
RNA id AMCG00014341
length 1516
RNA type mRNA
GC content 0.44
exon number 6
gene id AMCG00014341
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 10027652 ~ 10043566 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCATATTTTAAGTAATCCAATAGAGAACTTCAGAGGCACTCTCTCAACCAGTTCATTCTCTCGACGGGGCTCAGGAAGGCAGCACATCGTTACTGGAAGGAGAGAGCCGACTCCCTGGAGTCAAGATGACTGAGCGGTTCGACTGCCACTACTGTAAAGAGTCCCTGTTTGGGAAGAAGTACATCCTTCGAGAGGAGAATCCGTACTGTGTCAAGTGCTATGAGAGCCTCTACTCCAATGCCTGCGAGGAATGCAAAAAACCCATCGGCTGCAACTGCAAAGATCTCTCATACAAGGATCGTCACTGGCATGAAGAATGCTTCCATTGCTTCCAGTGCAAGCGCTCCCTGGTGGACAAGCCCTTCTCCACCAAGGATGAGCAGCTCCTGTGCACCGAGTGCTACTCCAATGAGTATTCATCCAAGTGCTACGAGTGCAAGAAGACCATCATGCCTGGCACCCGTAAGATGGAGCACAAAGGCAATAGCTGGCATGAGACCTGCTTCACCTGCCACCGCTGCCAGCAGCCCATAGGAACCAAGAGCTTCATTCCTAAGGAGACCCACAATTATTGCGTGCCATGTTACGAGAAGCAGTTTGCCATGCAATGTGTGCAGTGCAAAAAGCCCATCACGACTGGCGGAGTGACTTACCGTGAGCAGCCCTGGCACAAGGACTGCTTTCTGTGCACTGGATGCAAGAAGCAGCTGTCTGGACAACGCTTCACGTCTCGGGATGATTTTGCATACTGCCTGAACTGCTTCTGTAATCTGTATGCCAAAAAGTGTGCTGGATGCACAAACCCAATCAGCGGACTTGGAGGGAGCAAATACATCTCCTTTGAGGAACGCCAGTGGCACAACGATTGCTTCAACTGCAAAAAGTGTTCCGTCTCCCTGGTCGGCCGAGGATTCCTGACCGAGAGAGACGACATCTTGTGCCCTGAATGTGGCAAAGACATGTGAAGAGAATTTGATCTGGAAAGATGTCTAATCAGATGCATACTGATTATAAAGAAGTACTACCAGTATTAATACTTCTACTAACAACCTTACTATttgaattcatattaaaaaaataactaacatGGAGCTCTAGTGGCCTGATAGATGCTTTACAAAGAGCGTTTGCATGCACTGACATGAGATTTccttttgaatgcatttgaagTGTAAGCATgattattaaatgtaacaaaatatagaaaacaaacatcatttaaaaacatataagtTATTACTCCCAGTGCCAAATGAAGGCAAATcatgattatgaacattttGTACACCTAAAAGTGGAAAAGGTATTCCAGTTCAAAATTTGATATACTATGAATACCTTTTACAGAGTTTTATATAAAGTGAACCAACACTTAAAACGACTAATGATAAGACACAAGAGTGAGATGTTATGGGATCTAGTGTGCATGTACACATGACCAATCGATTCCAGTATTGCTTTTATCTTTCTTGTCTTGTATGTTCAGACACAATTacaggaaatattttaaaatgtc

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K14380 FHL2; four and a half LIM domains protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86723 lncRNA downstream 9901 10015490 ~ 10017751 (-) False AMCG00014340
TU86693 lncRNA downstream 92254 9935175 ~ 9935398 (-) True G69396
TU86691 lncRNA downstream 110317 9916845 ~ 9917335 (-) True G69394
TU86687 lncRNA downstream 115631 9901357 ~ 9912021 (-) True G69391
TU86688 lncRNA downstream 115631 9901357 ~ 9912021 (-) False G69391
TU86727 lncRNA upstream 10171 10053737 ~ 10054275 (-) True G69427
TU86735 lncRNA upstream 14531 10058097 ~ 10061092 (-) False AMCG00014339
TU86736 lncRNA upstream 14531 10058097 ~ 10061092 (-) True AMCG00014339
TU86793 lncRNA upstream 294321 10337887 ~ 10340946 (-) True G69483
TU86807 lncRNA upstream 376614 10420180 ~ 10479009 (-) True G69495
AMCG00014340 mRNA downstream 10208 10001134 ~ 10017444 (-) True AMCG00014340
AMCG00014332 mRNA downstream 555393 9467324 ~ 9472259 (-) True AMCG00014332
AMCG00014333 mRNA downstream 609416 9373456 ~ 9418236 (-) True AMCG00014333
AMCG00014331 mRNA downstream 660616 9358847 ~ 9367036 (-) True AMCG00014331
AMCG00014328 mRNA downstream 710746 9305239 ~ 9316906 (-) False AMCG00014328
AMCG00014339 mRNA upstream 14702 10058268 ~ 10061230 (-) False AMCG00014339
AMCG00014346 mRNA upstream 149063 10192629 ~ 10197751 (-) True AMCG00014346
AMCG00014348 mRNA upstream 197440 10241006 ~ 10256375 (-) True AMCG00014348
AMCG00014349 mRNA upstream 256437 10300003 ~ 10301361 (-) True AMCG00014349
AMCG00014347 mRNA upstream 274678 10318244 ~ 10328231 (-) True AMCG00014347
TU86630 other downstream 710485 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 1643428 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 1869062 8156229 ~ 8158590 (-) True AMCG00014298
TU86293 other downstream 1888526 8137331 ~ 8139126 (-) False AMCG00014297
TU86071 other downstream 2604361 7417598 ~ 7423291 (-) False AMCG00014278
TU86854 other upstream 753150 10796716 ~ 10798147 (-) True G69537
TU87063 other upstream 1616455 11660021 ~ 11662493 (-) False AMCG00014374
TU90285 other upstream 18286173 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 19345724 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 22219601 32263167 ~ 32263427 (-) True G73047

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000037_02293318_02298524.mRNA True 1328 mRNA 0.45 5 CI01000037 2292918 ~ 2298612 (-)