RNA id: AMCG00014342


Basic Information

Item Value
RNA id AMCG00014342
length 2256
RNA type mRNA
GC content 0.45
exon number 3
gene id AMCG00014342
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 10125154 ~ 10145702 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACAGAAGAGGTTATTGTTATAGCCAAGTGGGACTACACGGCGCAACAGGACCAAGAACTTGACATCAAGAAAAATGAACGTCTGTGGCTCCTGGATGACTCCAAAACGTGGTGGAGGGTAAGAAATGCATCCAATAAGACGGGCTACGTTCCGTCTAACTATGTGGAACGCAAGAACAGCCTGAAGAAAGGATCCCTTGTAAAAAACCTTAAAGACACACTAGGCCTGGGCAAGACGAAGAGGAAGACAAGCACCCGCGATGCCTCGCCCACCCCCAGCACAGACGCTGAGTATCCGTCCAACGGCAGCAGCGCCGACCGAATTTACGACCTCAGCATCCCCGCCTACGTCAAGTTTGCCTACGTGGCAGAGCGCGAAGACGAGCTGACGCTGGTGAAGGGCACCCGCGTGACAGTGATGGAGAAGTGCAGCGACGGGTGGTGGAGGGGCGGCTACTCGGGGCAGGTGGGCTGGTTCCCCTCAAACTACGttgtggaggagggggaggaggcctCCGCTGACTCGCCTAGTTTCCACTCCTCCCGACAAGGAGCCTCTGTCAGCAACGGCCAGAGCACCAAGGTCCTCCACATTGTCCAGACACTGTACCCCTTCAGCTCAGTCACCGAGGAGGAGCTGAACTTTGAGAAGGGAGAGACCATGGAGGTGGTGGAGAAGCCTGAGAACGACCCGGAGTGGTGGAAATGTAAAAACTCCAGGGGACAGGTGGGCCTGGTGCCCAAAAACTATGTGGTCATCTTCAGCGATGGCTTGGCCTCCAGCAGTTCCCACTCCCCTCAGATAAGCTACACCGGACCCTCCCCCACGGGCAAGTTCGCGGGGAAGGATTGGTACTACGGCAACATCACGCGGCACCAGGCCGAGTGTGCCCTCAACGAACGAGGCCCTAGCGATTTCTCTGTGTCGCTGAAAGCGTCAGGAAAGAACAAGCATTTCAAGGTGCAGCTGGCAGAAGGAGTTTACTGCATTGGCCAGCGGCGCTTTAGCACCATGGACGAGCTGGTTGAACACTACAAAAAAGCTCCCATCTTCACCAGCGAGCACGGAGAAAAACTATACCTGATCAAACCTCTGCAGTGACCCCGGCTCTGGAGTGGCCTACGGCAGACCTATCACAACTAGAAGCCTTAGTTTTGGACTTTCACTTTTACAGAGCAGAGCCATTTCTAAAcactttaattcagtttttttttattattattattattattatttaaaccaataaacaaccagtcagaaaaaaaatgtacaaacatgaaaaaaataaatgaactgtgGGGCTCGTATGGATTTATTTAGCTCTGTTGGTGGctgtttttgtcctttttttattgtttgtatgcCTGTTGTCTTTTAGTTCTTTTGAACTCATTTAACCTTTCCTAAGGTTGGAAGAAAAAATGAAGTCTTCACTAAGTGACCATTTTAAGCACTCGCTTTATGCCTTGGCTGAAAgctccctcactgtagatgttTTACTTGGTTTGGAAGTACTACGAAAACAGGGAGGAGTCCTTTCCAATTACAATAAGACAGTGTTAATCAATTTCAATTTGCTCTCACGCAAGCAGATCTCCTTAGAATCCATCGTGTGGCACTGACTGCACTGCAACGaatcaaaaagaaaatctatagGCGTAGCAGTTGTTGCTGTGAATTCTGTAGCTTTTGCTTCACAGGCAGTTGCAAATATCTCCTAGGGTCTCGAAGCACTCTGATACCAGTGACCAGTACACATGTATTACAGTCCAAAGTTATGATAGAACTGCTTTCATACACAGAAAGATTGTAGGGAGAATTTACTTATTGATCAGTTGAGAAGAAAAGTGATttgtaagagagagagggatctCTCGTAGACAtttaggaaagaaaacaactcAAGCCGAGTTGGGAGTTGAATGTTTGTTGATGTACAAACCAAATGTGCCACCACATACTGCTCGTCTCTTTTGCCCTACTGCTCGTTTCAATTAAAgacaatattatgtatttaattctcaGAGTAACATGTACCTGTAGCTGATTGTGAACACTAATTCATACGATTCATAAAAACGtatcatttttgttattatttaccttggaaatgtctgtttgtttaccAATGAAAGTCTATTGATCATAAGATTTTTCagctgtttaacaaaaaaaagaaaaaaggtataATATGTCTGAATGTTATTGAGCAtcgttatttaattatttccactgtatgtatatttaaaaaag

Function

GO: NA

KEGG:

id description
K19862 NCK2, GRB4; NCK adaptor protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86731 lncRNA upstream 69421 10055377 ~ 10055733 (+) True G69431
TU86728 lncRNA upstream 70443 10054491 ~ 10054711 (+) True G69428
TU86698 lncRNA upstream 96803 9974424 ~ 10028351 (+) True G69400
TU86679 lncRNA upstream 215106 9901450 ~ 9910048 (+) True G69384
TU86614 lncRNA upstream 748804 9366537 ~ 9376350 (+) True G69326
TU86745 lncRNA downstream 2277 10147979 ~ 10151913 (+) True AMCG00014345
TU86759 lncRNA downstream 77969 10223671 ~ 10224035 (+) True G69457
TU86811 lncRNA downstream 347445 10493147 ~ 10493396 (+) True G69499
TU86857 lncRNA downstream 691502 10837204 ~ 10838230 (+) True G69540
TU86875 lncRNA downstream 813624 10959326 ~ 10961929 (+) True G69556
AMCG00014343 mRNA upstream 53553 10015503 ~ 10071601 (+) True AMCG00014343
AMCG00014338 mRNA upstream 130483 9993673 ~ 9994671 (+) True AMCG00014338
AMCG00014335 mRNA upstream 143561 9959233 ~ 9981593 (+) True AMCG00014335
AMCG00014334 mRNA upstream 208365 9914125 ~ 9916789 (+) True AMCG00014334
AMCG00014337 mRNA upstream 216892 9841023 ~ 9908262 (+) True AMCG00014337
AMCG00014345 mRNA downstream 2750 10148452 ~ 10151030 (+) False AMCG00014345
AMCG00014344 mRNA downstream 10763 10156465 ~ 10162165 (+) True AMCG00014344
AMCG00014352 mRNA downstream 83298 10229000 ~ 10242261 (+) True AMCG00014352
AMCG00014351 mRNA downstream 162720 10308422 ~ 10318002 (+) True AMCG00014351
AMCG00014350 mRNA downstream 207143 10352845 ~ 10380421 (+) True AMCG00014350
TU86705 other upstream 116506 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 2708560 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 2775687 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 5473190 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 4191156 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 5529929 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 5529929 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 5983823 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 6319979 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile