RNA id: AMCG00014353


Basic Information

Item Value
RNA id AMCG00014353
length 3673
RNA type mRNA
GC content 0.41
exon number 2
gene id AMCG00014353
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 10652279 ~ 10708018 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTTTTCTCTCGCTCATAGTAGGCCTTGATTTGGTCGCAGCGCATCCGCTTCACCAGCCGCTGGCGCTGGCCGAGAGGGAGGGACTCCAGCAAGCACTGatatttcGTCGCAAAATGGCTGCAGCAGCGGAGTCTGCAATCACAACTCCGAGTACTGTCGCCTCTCAAGTTCCCTTTGGCCACTTGTGTTCAACTTTGGAaaaaattcagaaaacaaaaaccagaccAGAGAAAACTAAACATCTGAAAGACTTTCTTGAATCCTGGAGAAAGTTTCATGCTGTGCTCCACAAGGATGATCCAAACACCACTGACTCCTTTTACCAGGCAATGCGTCTTATTGTTCCTCAGTTGGAACGTGAGAGGATGGCATATGGGATAAAGGAAAACATGCTTGCCAAACTATACATAGAAGTTTTAGGTTTGCCAAAGGATGGGGCAGAGGCAAATAAGCTCCTGAAATATAGAGCTCCAACTACATCACAGGGAGAGGCAGGGGACTTTGCTGTCATGGCCTACTTTGTGCTTAGAAAAAGATGCCCAAACCATGGAAAGCTAACCATTAAAGAGGTGAATGATTTCTTGGATTCTGTCGCTAGTAACAACGCAGGAAAACAGAAGGACCTTGTGAAAAAGAACTTGCTGCAGCTGATTACCCGAAGCTCAGCTCTGGAGCAAAAATGGCTCATCCGTATGATCCTCAAAGACATGAAATTAGGAATCAGTAAAGAGACCATCTTCCAGATATTTCATCCAGATTCAGCAGAACTACACAATGTGACCACAGATCTCGAGAAAGTGTGTAGACAACTGCATGACCCTTCCGTTTCTCTCACTGATGTCTCCATCGGACTGTTTTCTCCCTTCAAACCTATGCTGGCTGCTGTTGCAAACTTAAAGCAAATTGAAAAGCAGATGAACAACCAGAGTTTCTACATCGAAACTAAGCTGGATGGTGAGCGCATGCAGCTGCACAAAGATGGGGATGTGTATAAGTACTTCTCACGCAATGGGTATGAGTACACACAACAGTTTGGGGCATCGCCATTGGAGGGATCACTGACTCCTTTTATACACAACGTCTTCAAGCCTCACATTGTCAGATGCATCCTAGATGGTGAGATGATGGCGTATAATCCCACTGCACAGACCTTCATGCAAAAAGGTAACAAGTTTGATATTAAGAGAATGGTTGAGGATTCTGAGTTGcagacatgtttttgtgtgtttgacGTGCTATTGGTGAATGACCAGAAAATGGGACACGAGACACTAAGAAAACGCTACGAGACCCTTCAGACCACCTTTACAGAAGTACAAGGTCGGATTCATGTTGTACACAGAACTGAAGCAAGGACCAAGCAGGAGGTAGTAGATACCCTCAATGAAGCAATTGACAACAGGGAAGAAGGAATTATGGTAAAGGATCCCTTGTCTGTTTACAAACCAGATAAGCGTGGAGAGGGATGGCTCAAGATCAAGCCAGAATACGTGGATGGCCTTATGGATGAACTTGACCTTTTGATCGTTGGAGGATACTGGGGGAAAGGCATGCGAGGTGGAATGATGTCCCATTTTCTGTGTGCTGTTGCTGAAGCCCCACCACCTGGTGAAAAGCCATCTGTGTTTCATACTCTTGTCCGTGTTGGTTCAGGTTATACGATGAAAGAGCTCTATGACCTGGGCCTAAAACTGGCAAAGCACTGGAAGCCCTACCGTAAGAAGGATCCCCCCACATCTATTTTGTGTGGCACGGAGAAACCAGAAGTTTATATCGACCCTTGCAACTCAGTGATCGTTCAAGTGAAGGCTGCTGAAATTGTGGACAGCGATATGTATAAGACAGAATGCACTCTGCGCTTTCCAAGGATAGAAAAAATAAGGGATGATAAAGAGTGGTACGAGTGTATGACGCTGAAGGACCTGGACAACTTCCGTGACAAGGCTTCAGGAAAGCTCGCATCTCGGCACGTGCGTTTAAACGACGATGAACCCGACAAAAAGAAACGCAAGATTGTTTCAAAACCCAAGAAAGTCATTGGGATAATTGACCACTTCAAGTCACAGGACCTTTCCAGGGTGAGCAAAGTGTCAGACATGTTTGAGGATGTGGAGTTCTGTGTCATGACCGGAAATGAGCAGCATTCAAAGCATGAGCTTGAGAAAGTAGTTGCCAAATGTGGTGGAGTCATAGTTCAAAACCCTGGTAAAGATACCTACTGTGTAATTGCTGGCGTGGAAAACATGAGGGTAAAGAATCTGATTTCTGCAAACCAATATGATGTAGTTCAGGCTGAATGGCTTCTGGAGTGCTTGGAGAAGAGGCAGTGTGTGCCATGGCAGCCTAAACACATGATCCACATGTCTCCAGCCACACAGCAACACTTTGCGAAAGAGTACGATCACTTCGGGGACAGCTTTTATGCAGACACAGATGTGAAAGAGTTAAGGGAGGTCTTCAGTAGGATCAGTGAAAAGGAAACGCAGATCCCTTCAGATGCCATTGCTGATTTAGAATTGAGGTATCATTGGGATGATCTCCCAACCAGTATGTTCAGGCAGTTTAAAATCTTTGTAGATCGCTATGCTGTCATTGGAGATCCTAGCAGCTTAATAGGTGGGACAAGTTTAGACATACGAGCCCTTGAGCTCAGGTTTCATGGAGCAAATGTTGAATCCGAGCTTGTGGAAGGGATTTCTCATGTTATTGTGGGAGATGAGGCTCGCATTTTAGACTTGAGATCCCAAAGAAGACTGTTTAGAGAGAAGTTTAAAATTGTGTCAGAATCGTGGGTTGTGGATTCAATCAAAGCTGGACACTTGCAAAATGACAATGACTActtagtttaaaatgttaaactaagCTGCTGCACTATAGCCTTCCTGACTTCACACAACAgcctttttatttcagttttaaatagcATTACATAGTTACACTTCATATTTTTAAGAGGAAACAAATATGTGGTATAAATTAGTaatatggaaataataataatggtgtatactataacaatgtaataggcatgcattatattattttcttacagtattgcgattttcaaaataatgtgtattgaATAACACTAATGTTTTCAAAGCCTTAAATCACAGTAGATTTTCACCTGATGATTCAAGGAAACCTTTTTATAGCATGTGTGTTAACCTTAATTCGTTGGCACTCAGTTGTTGAAACCATAGAAGTGAAGTATACTGAAATGGTTAGATAATAATATCTAGCCTACATCATTgtgatttgaaaacaaaacagtgtaaGATTTAGGTCATAGACTGCATTAGTAGGAAAGCAGCTCagggaaacaaaatgtgttttttgttaccTACAACGCAATTGTATATGCTAGTCAGACTAAACTTTTAGTAGttagacatgtttttattttttttatgtgcctTTGGATGTGGAGTGATATCCTAATATGGAAATTTTTTAtcaaacaagaaattaaatataattttgcttgTATTGTTAAGGGATGAACTATAAACTCAGCTGTTTTAatgttcatgttgttttttaattttattcatcATATTTAAACATAAGCTTTTAATCAAATTGTAACATGATTTAGGCAAGACATTTTGTCATGCTGCTGTTTTGGAGCTTGGACTAATGtcaataataaatgtgtgaagtaatcaaata

Function

GO: NA

KEGG:

id description
K10777 LIG4, DNL4; DNA ligase 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86807 lncRNA downstream 173270 10420180 ~ 10479009 (-) True G69495
TU86793 lncRNA downstream 311333 10337887 ~ 10340946 (-) True G69483
TU86735 lncRNA downstream 591187 10058097 ~ 10061092 (-) False AMCG00014339
TU86736 lncRNA downstream 591187 10058097 ~ 10061092 (-) True AMCG00014339
TU86727 lncRNA downstream 598004 10053737 ~ 10054275 (-) True G69427
TU86845 lncRNA upstream 31398 10739416 ~ 10739930 (-) True G69528
TU86847 lncRNA upstream 58582 10766600 ~ 10768258 (-) True G69530
TU86848 lncRNA upstream 65165 10773183 ~ 10773422 (-) True G69531
TU86849 lncRNA upstream 69033 10777051 ~ 10777441 (-) True G69532
TU86852 lncRNA upstream 84901 10792919 ~ 10793146 (-) True G69535
AMCG00014354 mRNA downstream 125310 10525613 ~ 10526969 (-) True AMCG00014354
AMCG00014347 mRNA downstream 324048 10318244 ~ 10328231 (-) True AMCG00014347
AMCG00014349 mRNA downstream 350918 10300003 ~ 10301361 (-) True AMCG00014349
AMCG00014348 mRNA downstream 395904 10241006 ~ 10256375 (-) True AMCG00014348
AMCG00014346 mRNA downstream 454528 10192629 ~ 10197751 (-) True AMCG00014346
AMCG00014358 mRNA upstream 191990 10900008 ~ 10903196 (-) True AMCG00014358
AMCG00014359 mRNA upstream 253231 10961249 ~ 10974117 (-) True AMCG00014359
AMCG00014360 mRNA upstream 266447 10974465 ~ 10991144 (-) True AMCG00014360
AMCG00014364 mRNA upstream 380729 11088747 ~ 11096433 (-) True AMCG00014364
AMCG00014368 mRNA upstream 396960 11104978 ~ 11121831 (-) True AMCG00014368
TU86630 other downstream 1335112 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 2268055 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 2493689 8156229 ~ 8158590 (-) True AMCG00014298
TU86293 other downstream 2513153 8137331 ~ 8139126 (-) False AMCG00014297
TU86071 other downstream 3228988 7417598 ~ 7423291 (-) False AMCG00014278
TU86854 other upstream 88698 10796716 ~ 10798147 (-) True G69537
TU87063 other upstream 952003 11660021 ~ 11662493 (-) False AMCG00014374
TU90285 other upstream 17621721 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 18681272 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 21555149 32263167 ~ 32263427 (-) True G73047

Expression Profile