RNA id: AMCG00014359


Basic Information

Item Value
RNA id AMCG00014359
length 2769
RNA type mRNA
GC content 0.57
exon number 24
gene id AMCG00014359
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 10961249 ~ 10974117 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTCCACAGGGAAGCCCTGGCATCCCTGGCCTACAGGGACAAAAAGGTTACCCAGGAATGCCTGGGGCCGCTGGTCAGCCTGGCCCCTCGGGACGCCCAGGCCAGGACGGTTTGGTTGGACACCCAGGCCCAGTTGGGCAGAAGGGTGAACCGGGGATTGGTCTTCCAGGGCCTAAGGGAGCCACAGGCCCTGAAGGTGTTCCTGGACTCCAAGGAGAGAAAGGGAACCCAGGATTTCAAGGAATCCCGGGACAGTCGGGACATACGGGACCACCGGGAACTCATGGTGATCCAGGTTTGCCAGGCCCACAGGGCTTTCGGGGCCCTCCTGGTCCCCCAGGGACCGGTGACCCAGGTCAACCTGGACCTGAGGGCCCTCCAGGATTTCCTGGCCCATTTGGTAGGATCACAGGGACAGAAGGGTGAGAAAGGCTACCCTGGTTTTCCAGGCCTGGACATGCCTGGGCCCcagggagagaaggggatcCAGGGCTACTCTGGGAGTCCAGGAGACCGTGGGCTTCCTGGGATACCTGGCCCCTCAGGGAGAGAGGGTTTCCCTGGAGATCCAGGCCCCAAGGGAGAAATGGGAGTGATGGGAACCCCCGGATTCCCTGGATCACAGGGTACTAAAGGCAGCCCTGGTACCCCTGGCCCAAAAGGTGACCAAGGCCTCCCTGGGGTGAGAGGAGAATCTGGTGAACCAGGAGCCAAAGGAGACACAGGGGAGCAGGGTATACCAGGGCCTCCTGGGAATATGACTGATGTGGACATGGAGCACCTGAAGGGAGACAAGGGGGACCCTGGTGACATAGGTGATCCTGGAATAAGAGGATCGCCGGGTTATCAGGGAGAACCAGGCAGCCCAGGAATGCCAGGGAAAGATGGAGATCGAGGCCAACCTGGCCAGCCAGGTGCTAAAGGTGACCAAGGTGAACCAGGACAACCTGGGTTTCCTGGTACCCCAGGCCCAAAGGGTGGCATGGGGGAAATGGGAATACCAGGTTCTATTGGGCCAAAAGGAACCAAAGGTATTTCTGGTACCCCtggggaccctggtacaccagGGCTCGCTGGGGATAAAGGAGTGAAAGGTGATGCAGGATTGCCAGGCATTGGAGTTCCAGGGCCTCAAGGAGAAAAGGCTTCACAGGGTTTCCAGGAGAACCAGGTGAAAAAGGCCACAAGGGCATTGCTGGTGTCCCAGGAATGCCAGGAAAAGCTGGGGATAAAGGAGACACGGGATCCCAAGGATATCGAGGCAAGTGAACAAGGACTTCAGGGTGAATCTGGCACAAAAGGGGAAAAGGGGGACCCTGGCATAGATGGAATCCCAGGAGTACCTGGAGAGAGAGGTGATCCAGGTGTTCCAGGCAAAGGGCTCCCAGGGACACCAGGTCTGACGGGGGATAAAGGGGTGAAATCTTCATGTCTGCACTCTGCCACCTCATTTTCAGTGAAAAGGGTGCAAGGGACAGAGGGAGTGAAGGTCTTCCGGGTATCCCAGGGATTCCAGGAACACCAGGAATCAAAGGGGACAGGGGTACCCCGGGTTACGAAGGTCAGCAGGGCCATCCAGGAGAAAGAGGTCTACCTGGCCCAGCCATGCAGGGGCCCAAAGGAGACAGAGGACTGCCAGGAGAATCTGGGCAACCAGGTGCGCCTGGAGCCCAGGGGCCTCCTGGATACCCAGGGAGTGCTGGGTCCAAAGGAGAGAAAGGAATCCAAGGCTTCAGTGGACCGCCCGGACAGGCAGGGAAACACCGGCCTGCCTGGCCTTAATGGGGAAAAGGGGGACAAGGGATCCCCAGGAGTTGCTGGATTCCCAGGCCCCCCAGGCCCTTTCATATCTGTGAAAGGGGATATTGGTTTCCCAGGCCCCCAGGGGCCGCAAGGGCCTGCTGGACTGAGAGGGTATCCAGGACCAAAAGGACAACAAGGTATGACTGGCCCAACAGGGTTGAAAGGAGAGGATGGCATGCCTGGATTTGATGGAAGACCTGGAATGAAAGGAGAGCCTGGCCCTATTGGCCCTTCAGGTCCCAGGGGATATACAGGACCCCCAGGCCCAGATGGCCCACCTGGCCCAGTGGGTTCTCCAGGGCCTTCATCCAAAGCTCATGGCTTCCTTGTCACCAGACACAGTCAGATGGTGGAGGTGCCATCTTGTCCCCAGGGCACATCTCTGATTTACGATGGCTATTCTCTCCTTTATGTGCAAGGCAATGAAAGATCACATGGACAAGACTTAGGAACAGCCGGCAGCTGCCTCCGAAAGTTCAGCCCCATGCCATTTTTGTTCTGCAACATCAATAATGTTTGTAACTTTGCATCAAGAAATGATTACTCCTACTGGCTGACCTCACCAGAGCCAATGCCAATGAGCATGGCTCCTGTCACTGGGGAGAGCATAAAGCCTTTCATCAGCAGGTGTGCTGTCTGTGAGGCCCCAGCCATGGTCATTGCTGTCCACAGCCAGACAATTCAGATCCCAAACTGCCCCAGTGGATGGGACTCTCTGTGGATTGGATATTCCTTTGTGATGGCCCTGGCCTCCCCCGGATCCTGTCTGGAAGAGTTCCGCAGCGCCCCCTTTATTGAGTGCCACGGCAGAGGCACCTGCAACTACTACGCCAACTCCTACAGCTTCTGGCTAGCTACCATAGATACTGGTGACATGTTCACGAAACCTGTGCCCACGACCCTGAAAGCAGGAGATTTACGAACCCACATCAGTCGATGCCACGTCTGCATGAAGAGGACATAA

Function

GO:

id name namespace
GO:0005581 collagen trimer cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
K06237 COL4A; collagen type IV alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86856 lncRNA downstream 140177 10815771 ~ 10821072 (-) True G69539
TU86853 lncRNA downstream 165060 10795883 ~ 10796189 (-) True G69536
TU86852 lncRNA downstream 168103 10792919 ~ 10793146 (-) True G69535
TU86849 lncRNA downstream 183808 10777051 ~ 10777441 (-) True G69532
TU86848 lncRNA downstream 187827 10773183 ~ 10773422 (-) True G69531
TU86933 lncRNA upstream 158671 11132788 ~ 11137086 (-) False AMCG00014365
TU87123 lncRNA upstream 795573 11769690 ~ 11771393 (-) True G69743
TU87141 lncRNA upstream 904980 11879097 ~ 11880456 (-) True G69759
TU87239 lncRNA upstream 1996136 12970253 ~ 12970555 (-) True G69849
TU87308 lncRNA upstream 2111246 13085363 ~ 13086345 (-) True G69896
AMCG00014358 mRNA downstream 58053 10900008 ~ 10903196 (-) True AMCG00014358
AMCG00014353 mRNA downstream 253231 10652279 ~ 10708018 (-) True AMCG00014353
AMCG00014354 mRNA downstream 434280 10525613 ~ 10526969 (-) True AMCG00014354
AMCG00014347 mRNA downstream 633018 10318244 ~ 10328231 (-) True AMCG00014347
AMCG00014349 mRNA downstream 659888 10300003 ~ 10301361 (-) True AMCG00014349
AMCG00014360 mRNA upstream 348 10974465 ~ 10991144 (-) True AMCG00014360
AMCG00014364 mRNA upstream 114630 11088747 ~ 11096433 (-) True AMCG00014364
AMCG00014368 mRNA upstream 130861 11104978 ~ 11121831 (-) True AMCG00014368
AMCG00014365 mRNA upstream 150912 11125029 ~ 11137076 (-) True AMCG00014365
AMCG00014366 mRNA upstream 165335 11139452 ~ 11144825 (-) True AMCG00014366
TU86854 other downstream 163102 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 1644082 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 2577025 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 2802659 8156229 ~ 8158590 (-) True AMCG00014298
TU86293 other downstream 2822123 8137331 ~ 8139126 (-) False AMCG00014297
TU87063 other upstream 685904 11660021 ~ 11662493 (-) False AMCG00014374
TU90285 other upstream 17355622 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 18415173 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 21289050 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 21623345 32597462 ~ 32614806 (-) True G73127

Expression Profile