RNA id: AMCG00014364


Basic Information

Item Value
RNA id AMCG00014364
length 1813
RNA type mRNA
GC content 0.43
exon number 2
gene id AMCG00014364
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 11088747 ~ 11096433 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTGCGGGACTCCGCGGGTGTTACTTGTTTCATATCCTCTCCATATGTCAACACAACAGCGCTATAAAAGTGCAGCAGGCCACATgctacactacagcacagacGCAAACCGCCCGCCTTTTTAACTGAAGGGAACTATGGTAGCCACTGAAACGGAGCTTGAGTGGTGAATTAGTTTGTTGTCCTTGCCTGAATGTGCGACAATGACGAAGCCCGACGTGAAGCTGGTGATCTTGGGCGACATCCACGTCGGGAAGACCTCCCTGCTGCACCGGTACACCGAGAGGCGCTTTAAAGAGACGGTCAGCACGGTCGGAGGGGCTTTCTTCCTGAAACAGTGGGGCCGGTACAACATCTCCATCTGGGACACGGCAGGGCGGGAGCAGTTCCACGGGCTGGGCTCCATGTACTGTAGAGGCGCCGCGGCCGTCATCCTCACTTATGATGTCACTAGCTGGCAGAGCCTGGCTGAGCTGGAGGACAGGTTCTTGTCCCTGACGGACACTGCCAACTCGGACTGCTTTTACGCCATTGTTGGAAACAAAGCTGACCTCACTGACTCTGCAGCCTCTGTGGCAGAAACTGGCGAAGAGCTGGAGAGTAACGGAGACCAGTCTACTACTTGGCGCCAAGTCGCTCCAAAAGCACGCAGGCAAGTACACAGGGATGACGCCATTGGACTTTACCACAGGATCCTGCGCTACAAGATGCTGGACGAGAAAGAGAATCCCCCCGCGGAGAAAATGTGCTTTGAGACGAGCGCCAAGACGGGCTACAATGTGGACTTGCTCTTCGAAACTCTGTTTGAAATGGTGGTACCTGGCATTATCAAAAAGAAAGCTGAAGACTTGTCCAATACTATTGATTTGGAAGAGTGCAATGATGTGAAAAGGACTAAACCAGGCTGCTGCTTTTAAATTGGTAAACATGTAGTTTGTGCATTCCAGTTATTTTAGATCCTGTTTGTTCTAGGAAATCCTTGGCTGCAGTTTTCCAATTGCTGAGTAAGAGGATAAAAGGCTGGGAAGTCTAGAAGTAATTGTGTAGGCTTCAGTGCACATTGCTTATCCAGCAGACTCCGTGTTGTTCCATCACTCCCCCTCACATTTCTGTTGCAAATGTTAACTGTCATGCTAATGAACAATCGAAGCAGAAACAATAGCTATGAGGTTGAAGTTCGAAACGTATTCAAATCTGAAACTCTAATTGAAAGTCAGATGTTTATTAGCACTTCAAGATCAAAGGCATGATCAACAGGATTGAAGCTTAGGTTTAAAAAGTCACTAAACAATGCAATAGAAAGTACTGCTGCTTTATCTGTTAATAAAGATAATGTTAAATTCATAATGATCTACAAAGCACACAACCTAAATGGTCCACTTAAGTCATTTGCAAAATCCTGTTTGAGGAACTTTATGAATTAAACCTAAAAGTATCTACtataatgttattataataatgttatttgaaatgagtatttttactgtgttttgattttgtaagtCTCTTTTCCATTATGCTAaccacatttataaaacaatgtcaATTTTAAAGGACCAGCTATTTTCACACTaattataaaacagaataaaggtGATAACAATCATGTTGCTATGTATTcttctttttaagttttttattcttcttcaatTAAGAATATTAATGTGGGGgctttttctttacatatcCTAGCAGACCCAAGAATTGCATATTCTTAGTGATGGGTGACCTTTCTAACTTTGCAATGATTTGGCAGCTTATTCTTGAATGTAATGGCTGTTCCATAAGAAATTAATTTGAGGCTTCATTAAGG

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K07911 RAB20; Ras-related protein Rab-20

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86856 lncRNA downstream 267675 10815771 ~ 10821072 (-) True G69539
TU86853 lncRNA downstream 292558 10795883 ~ 10796189 (-) True G69536
TU86852 lncRNA downstream 295601 10792919 ~ 10793146 (-) True G69535
TU86849 lncRNA downstream 311306 10777051 ~ 10777441 (-) True G69532
TU86848 lncRNA downstream 315325 10773183 ~ 10773422 (-) True G69531
TU86933 lncRNA upstream 36355 11132788 ~ 11137086 (-) False AMCG00014365
TU87123 lncRNA upstream 673257 11769690 ~ 11771393 (-) True G69743
TU87141 lncRNA upstream 782664 11879097 ~ 11880456 (-) True G69759
TU87239 lncRNA upstream 1873820 12970253 ~ 12970555 (-) True G69849
TU87308 lncRNA upstream 1988930 13085363 ~ 13086345 (-) True G69896
AMCG00014360 mRNA downstream 97603 10974465 ~ 10991144 (-) True AMCG00014360
AMCG00014359 mRNA downstream 114630 10961249 ~ 10974117 (-) True AMCG00014359
AMCG00014358 mRNA downstream 185551 10900008 ~ 10903196 (-) True AMCG00014358
AMCG00014353 mRNA downstream 380729 10652279 ~ 10708018 (-) True AMCG00014353
AMCG00014354 mRNA downstream 561778 10525613 ~ 10526969 (-) True AMCG00014354
AMCG00014368 mRNA upstream 8545 11104978 ~ 11121831 (-) True AMCG00014368
AMCG00014365 mRNA upstream 28596 11125029 ~ 11137076 (-) True AMCG00014365
AMCG00014366 mRNA upstream 43019 11139452 ~ 11144825 (-) True AMCG00014366
AMCG00014367 mRNA upstream 71207 11167640 ~ 11175442 (-) True AMCG00014367
AMCG00014372 mRNA upstream 363180 11459613 ~ 11502601 (-) True AMCG00014372
TU86854 other downstream 290600 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 1771580 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 2704523 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 2930157 8156229 ~ 8158590 (-) True AMCG00014298
TU86293 other downstream 2949621 8137331 ~ 8139126 (-) False AMCG00014297
TU87063 other upstream 563588 11660021 ~ 11662493 (-) False AMCG00014374
TU90285 other upstream 17233306 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 18292857 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 21166734 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 21501029 32597462 ~ 32614806 (-) True G73127

Expression Profile