RNA id: AMCG00014368


Basic Information

Item Value
RNA id AMCG00014368
length 1239
RNA type mRNA
GC content 0.44
exon number 12
gene id AMCG00014368
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 11104978 ~ 11121831 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTTTCCCCACTTGACAGCGTTATCTCCTATGTGAGGTTTGACATTCTTCAAAGAATTTTGTCCAGGGTTTTTGGGATCAACATAGTCCACGTGATGGTTATAACAGACATTgatgacaaaataattaagagaGCTTCAGAGGAAAATGTCCCGCCATTAGTTCTCGCAAGGCTATATGAAGAGGAGTTTAAAAATGATATGGAAGCTCTTAAGgTGCTTCCTCCTACAGTCTACATGAGAGTGACTGACAATATTCCTCAAATCATTGCGTTCATAGAGGgcattattaataacaaacatgcCTATGTCACAAGTAAAGgGAATGTGTATTTTGACATCAAGTCTATTGGAAATCAATATGGGAAGATGATAAGAATGGGTGAGACAGAGGGCGAACCAGGGGACTCAGATAAAAGTGATGCCAGGGATTTTGCGCTCTGGAAAGCATCCAAACCACAGGAACCAAACTGGGTGTCTCCTTGGGGACAGGGGAGACCTGGCTGGCACATTGAATGTTCGACAATAGCCagTTCTGTTTTTGGAAGTCAGCTTGATATCCATTCTGGTGGAATTGATCTTGCGTTTCCGCACCATGAGAATGAAATTGCACAGTGTGAAGCTTATCATCAGTGTTCGCAATGGGGCAACTACTTCCTACACTCAGCCATCGACTACAGCAACACCAGCATGACTGTGGCAAAAAGTGTTCTTAGCtccatttcttctttctttgaTGATTCAAACGCGTACATTAAAGGGCAACATCTATGCCAGGCTGTGGATGAAGGTGTGTTATGGGAAAGGTTAGCCACAACAAAAGTAAATGTTCAGAAAGCTCTGGCAAATGACTTTGACACCCCAAGGGCTGTCGATGCAATTATGAGCCTCATTCACCATAGCAACCAACAGCTTCAGGGAGTTGCCAAGggTCGATCCTGCCGAAGTCCTGTGGTTTTTGGAGCTATCCAGTCATATATTACGACATTCCTGGATGTAGTTGGGTTTGATTTACAGGACAGACAGTTCCGCAGCCAGGTACGGAGATATGCTTTGGCCGTGGATGAGCTGGCTGCTCTGTCATCGGAAAGCAGCCAACCAACACAGGAGGAAAAAGCCAAAATAAAGCAGCGCAAGAGAGAGCTTATAGCAGAACGAGAGTGTTTGCTCATAGCCTGTGATGTGTTTCGGCAAGATCTCGCACCTTTTGGGATTCATATAAAGAAAGTCTACTGCTAA

Function

GO: NA

KEGG:

id description
K01883 CARS, cysS; cysteinyl-tRNA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86856 lncRNA downstream 283906 10815771 ~ 10821072 (-) True G69539
TU86853 lncRNA downstream 308789 10795883 ~ 10796189 (-) True G69536
TU86852 lncRNA downstream 311832 10792919 ~ 10793146 (-) True G69535
TU86849 lncRNA downstream 327537 10777051 ~ 10777441 (-) True G69532
TU86848 lncRNA downstream 331556 10773183 ~ 10773422 (-) True G69531
TU86933 lncRNA upstream 10957 11132788 ~ 11137086 (-) False AMCG00014365
TU87123 lncRNA upstream 647859 11769690 ~ 11771393 (-) True G69743
TU87141 lncRNA upstream 757266 11879097 ~ 11880456 (-) True G69759
TU87239 lncRNA upstream 1848422 12970253 ~ 12970555 (-) True G69849
TU87308 lncRNA upstream 1963532 13085363 ~ 13086345 (-) True G69896
AMCG00014364 mRNA downstream 8545 11088747 ~ 11096433 (-) True AMCG00014364
AMCG00014360 mRNA downstream 113834 10974465 ~ 10991144 (-) True AMCG00014360
AMCG00014359 mRNA downstream 130861 10961249 ~ 10974117 (-) True AMCG00014359
AMCG00014358 mRNA downstream 201782 10900008 ~ 10903196 (-) True AMCG00014358
AMCG00014353 mRNA downstream 396960 10652279 ~ 10708018 (-) True AMCG00014353
AMCG00014365 mRNA upstream 3198 11125029 ~ 11137076 (-) True AMCG00014365
AMCG00014366 mRNA upstream 17621 11139452 ~ 11144825 (-) True AMCG00014366
AMCG00014367 mRNA upstream 45809 11167640 ~ 11175442 (-) True AMCG00014367
AMCG00014372 mRNA upstream 337782 11459613 ~ 11502601 (-) True AMCG00014372
AMCG00014374 mRNA upstream 538180 11660011 ~ 11667537 (-) True AMCG00014374
TU86854 other downstream 306831 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 1787811 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 2720754 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 2946388 8156229 ~ 8158590 (-) True AMCG00014298
TU86293 other downstream 2965852 8137331 ~ 8139126 (-) False AMCG00014297
TU87063 other upstream 538190 11660021 ~ 11662493 (-) False AMCG00014374
TU90285 other upstream 17207908 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 18267459 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 21141336 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 21475631 32597462 ~ 32614806 (-) True G73127

Expression Profile