RNA id: AMCG00014370


Basic Information

Item Value
RNA id AMCG00014370
length 1017
RNA type mRNA
GC content 0.61
exon number 1
gene id AMCG00014370
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 11392389 ~ 11393405 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGACGGACTTGCACTCCCCAGGACCCCAGACTAATACGAATTCGGGGCAAACGGGTCCCAACAACGGGAGCAAGGCTAACCAAGACCGGGTAAAGAGACCGATGAACGCGTTCATGGTCTGGTCCCGGGGCCAGAGGCGAAAGATGGCTCAAGAAAACCCCAAGATGCACAACTCTGAGATCAGCAAGAGGCTGGGCGCGGAGTGGAAAGTCATGTCGGAGGCAGATAAAAGACCCTTTATTGACGAAGCCAAGAGGCTGAGAGCCATGCACATGAAAGAACACCCGGATTACAAGTATAGACCCCGGAGGAAGACCAAGACGCTGCTCAAGAAGGACAAATACTCCTTGGCCGGTGGGTTGCTTGCCGCAGGGGCCGGCAGCGGAGGGGGAGTGGGACTCGGGGTCGGGATGAGCCCGGCGGGGGTCGGACAGAGGCTGGAGAGTCCCGGGGGTCACGGTGGCACGGCCAACACTGGCTATGCGCACATGAATGGCTGGGCAAACGGCGCCTACTCGGGCCCAGTGGCAGCTGCTGCCGCGGCCGCAGCGATGATGCAGGAGGCGCAGCTCGCCTACAGCCAGCACCCGGGCAGCGGGGCGCACCACCACCAcgcacaccaccaccacccgcACAACCCGCAGCCCATGCACCGCTACGACATGACGGCGCTGCAGTACAGTCCCATCTCGAACTCGCAGGGCTACATGAGCGCCTCCCCGTCGGGCTATGGGGGCATCTCCTACACACAGCACCAGAACTCGAGTGTGGCTTCGTCGGGGGCTATCGGCACCCTGGGGTCGCTGGTGAAATCGGAGCCAAGTGTAAGCCCTCCCGTTACCACTCACTCCCGAGCTCCGTGTCCGGGGGACTTGAGAGAGATGATAAGCATGTATTTACCGACGGGAGAAGCAGGTGACCCGTCAGTCCAAAACAGACTTCATGCACTGCCTCAGCACTATCAGAGCACCACCACAGGGGTAAACGGAACAGTTCCACTGACACACATTTAA

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0051091 positive regulation of DNA-binding transcription factor activity biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09267 SOX1S; transcription factor SOX1/3/14/21 (SOX group B)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86944 lncRNA upstream 171115 11221070 ~ 11221274 (+) True G69610
TU86875 lncRNA upstream 430460 10959326 ~ 10961929 (+) True G69556
TU86857 lncRNA upstream 554159 10837204 ~ 10838230 (+) True G69540
TU86811 lncRNA upstream 898993 10493147 ~ 10493396 (+) True G69499
TU86759 lncRNA upstream 1168354 10223671 ~ 10224035 (+) True G69457
TU87041 lncRNA downstream 247678 11641083 ~ 11641452 (+) True G69681
TU87100 lncRNA downstream 325913 11719318 ~ 11722767 (+) True G69722
TU87118 lncRNA downstream 390460 11783865 ~ 11784083 (+) True G69739
TU87160 lncRNA downstream 1206699 12600104 ~ 12600313 (+) True G69778
TU87223 lncRNA downstream 1586854 12980259 ~ 12982434 (+) True G69833
AMCG00014369 mRNA upstream 171615 11177961 ~ 11220774 (+) True AMCG00014369
AMCG00014361 mRNA upstream 263029 11125399 ~ 11129360 (+) True AMCG00014361
AMCG00014363 mRNA upstream 286539 11097567 ~ 11105850 (+) True AMCG00014363
AMCG00014362 mRNA upstream 305787 11061595 ~ 11086602 (+) True AMCG00014362
AMCG00014355 mRNA upstream 591079 10766636 ~ 10801310 (+) True AMCG00014355
AMCG00014371 mRNA downstream 147027 11540432 ~ 11561870 (+) True AMCG00014371
AMCG00014373 mRNA downstream 212563 11605968 ~ 11640460 (+) True AMCG00014373
AMCG00014376 mRNA downstream 250623 11644028 ~ 11659546 (+) True AMCG00014376
AMCG00014378 mRNA downstream 274751 11668156 ~ 11678181 (+) True AMCG00014378
AMCG00014377 mRNA downstream 295828 11689233 ~ 11696926 (+) True AMCG00014377
TU86705 other upstream 1383741 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 3975795 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 4042922 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 6740425 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 2943453 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 4282226 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 4282226 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 4736120 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 5072276 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001011 True 1775 mRNA 0.51 1 NC_007112.7 46194333 ~ 46196107 (+)
grasscarp (Ctenopharyngodon idella) CI01000119_02031570_02032574.mRNA True 2064 mRNA 0.41 1 CI01000119 2030668 ~ 2032731 (-)
rainbow trout (Oncorhynchus mykiss) TU658059 True 1348 lncRNA 0.55 2 NC_048571.1 13839239 ~ 13873273 (+)