RNA id: AMCG00014371


Basic Information

Item Value
RNA id AMCG00014371
length 4161
RNA type mRNA
GC content 0.49
exon number 22
gene id AMCG00014371
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 11540432 ~ 11561870 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCATTGTGGGAAGCTTCAGAGTAGCACAGAGAGGCGCTTTCGGCGGGTTCAGTTAAAATGGCGCCGTTGCTAAGAGCGGAAAGCCACGGCACACATAACGGCTGCAGGTAGATCTGGACACCGAAACGGAGTCGTGTTAGACAGTTCAACGCCATGGCAGGTCTGGATCAAAAATCCCCCAACGTGTTGTTACAGAGTCTCTGTTGCAAGATTACCGGGAAGAGCGAAGCTGAAGTTGCGCACCAGTTCCAGTATGCCGTTCGAGTGATCGGGAGCAACTACGCACCTACAATCGAACGGGATGAGTTTCTTGTTTCTgaaaagataaagaaagaaTTTGTGAAGCAAAGGAGAGAGGCAGATGCTGCACTTTTTTCTGAACTTCACAGAAAACTACAATCAcagGGGGTGTTAAAGAATAGATGGTCCATACTGTACCTGCTGCTCAGCCTTTGCGAGGATCCACGTAAACCTGCTACTAGGGTTGCCAATTATGCAACACTGTTTGCTCAGGCTTTGCCGAGAGATGCCCACTCCACCCCATACTACTGTGCCAGGCCGCAAAGCCTGCCGCTCAGCTACCCTGATAGGAATCTGTGTACGCAGAGTGGGGGCAGCATGGGCAGCAGTGGGGTCAGCAGCCTTGGGATTTATGCAATGAACGGGCCCACACCAACCCCACAGTCGCTGCCGGGCGGGTCCCAGGTGGTTGGCGACTCTCTCCGCCAGCAGCTGGGCGCTCGGTTGGCCTGGAACCTGccctctgcctccccctctGCTCCAGCACCTACCTCAAGAGGCCTTCCCAACACTGCGGGCCGCAGCGCGCCCAGACAGCGGCGGGACGGGGAAGCAAGCGgCACTGTTGAAATCAGTGAAGCTGCCCTAGTCAGAGACATTTTATATGTCTTCCAGGGGATTGATGGCAAGTTCATCAAAATGTGCAGTCCTGAAAACTGCTATAAAATTGATGCCAAGATTGCGATATCAAAGTCCCTTCGAGACATCACTAGCAGACTGGCAGAGCTGGGCTGGCTGCATAACAAAGTGAGAAAGTACACCGACCAGAGGAGCCTTGACCGGGCATTCGGGCTTGTTGGCCAGAGCTTCTGTGCTGCCCTTCATCAGGAACTCAAGGAGTACTACAGACTCCTCTCCGTTTTACATTCACAGCTGCAAGTTGAGGATGACCAGGGAGTGAATGTGGGAGTCGAAAGCAGTTTGACACTCCGGCGCCTTCTGGTGTGGACTTACGACCCCAAGATCAGACTGAAAACTCTGGCAGCTCTTGTAGATTACTGTCAAGGGAGGAAAGGGGGAGAGCTGGCCTCGACTGTCCATGCGTACGGCAAAACCGGGGATCCGAACATGAGAGCGCTGGTGCAGCACATCCTCGGCCTGGTGTCCCACCCCATCCTCAACTTCCTGTACCGCTGGATTTATGATGGAGAGCTGGAGGATACTTACCACGAGTTTTTTGTCGCCTCCGACCCGACAGTGAAGACCGACCGACTCTGGCATGATAAGTACACTCTGAGGAAATCCATGATGCCCTCGTTTATAACTATGGATCAAGCCCGGAAGGTTCTTCTCATAGGAAAATCAATTAACTTCTTGCATCAAGTTTGCCACGACCGGACTCCTCCTGGGAAAATAACTCCAACATCAAAATCTGCTGATTCTCCCAAAGATGCTGCTGAGCTATTCACTGACTTGGAAGGGGCCTTCCAAGGGAGAATTGATGCGGCCTATTTTGAGACCAGTAAATATCTCCTGGATGTCCTCAACAAGAATTACCTCCTGCTGGAACACATGCAGGCCATGAGGCGCTACTTACTGCTGGGCCAAGGAGACTTCATACGCCACTTAATGGATCTGCTGAAACCAGAACTGGCAAGGCCAGCCACCACTTTGTACCAGCACAACCTGACGGGCATCCTGGAGACTGCAGTGAGGGCCACAAATGCGCAGTTTGACAGCCCTGAGATCCTTAAACGGCTAGACGTCAGACTTCTTGAGGTATCGCCTGGCGACACGGGTTGGGATGTGTTCAGTCTGGATTACCACGTCGAAGGCCCCATTGCCACGGTTTTCACTCGGGAGTGTATGAGCCATTACCTCAGGGTGTTCAACTTCCTCTGGAGAGCAAAACGCATGGAATACATTCTCACAGACATCTGGAAGGGCCAAATGTGCAACGCCAAGCTGCTCAAGGGCATGCCAGAGCTCTCCGGAGTATTACATCAGTGTCACATCCTGGCATCAGAAATGGTTCACTTTATTCACCAGAtgcaatattacattacatttgagGTGCTGGAGTGCTCTTGTGATGAACTGTGGAACAAAGTCCAGCAGGCCCAAGACTTAGACCACATCATTGCTGCTCACGAAGTGTTCCTTGATACCATCATATCCCGCTGTTTGCTGGACACCAATTCCAGGGCCCTCCTGAACCAGCTGAGAGCCATCTTTGACCAGATCATTGAGTTCCAGAACGCCCAAGATGCTCTGTACCGCGCCGCGCTCGAGGAGCTGCAGCTCCGACTGCAGTTCGAGGAGAAGAAGAGACAGCGGGAGACGGAGGGTGAGTGGGGAGTGACAGCAGCACaggaagaagaggagaagaaaCGAGTTCAGGAATTTCAAGACGCCATACCAAAAATGCGCTCCCAGCTTCGAATACTCACACACTTCTACCAGGGTATCGTCCAGCAGTTCTTGGTGCTGCTCATGACCAGTTCGGATGAAAGCCTGCAGTTTCTGAGCTTCCGTCTGGATTTCAATGAGCACTATAAAGCCAGGGAGCCCCGGCTCCGTGCCTCTCTGGGAGCAACACGGGGGCGACGCAATCCCAGCATGTAGACCACCTACCTGTAGCGTTTTATACCAATTTTCGATAGGGCTACACTGACCTTTTTACACAGTGTCAAACACCTCCCGAGGTTCCATGTCATTGCCAAACAGTGCAGACGCTCACTAAATGCTCCAGAAAGCAGAGTGGTTAAAACAATGTGGAATTTGAGTAGCACGAGGTCACAATGCTGTCTGTTTTCTGCTCGTCTGATTCTGTGTAGAGAAAAGAGatgattgttttgctttttttctcctttgtttaCAGTTCTGAAATCTTACATTACGTGGTGCGATTCATGTCAGTGGTCTCCTGTCTCTCCATTTTTTTAACCAGTTTTGcactttaaagaaaatgtttccacCTTCTGCCCATGTCTGTGCCCAGGCCCTCTGTCCTAATATCAGCCCGAGTCAAATTAACTTAATCTTTGTATTTGCatatatgaaaacaatgtttttatctctattttaataatgcacTAGCTATAGCTGAGCACATATTCCTCAGTATTGATGCAGATTCCCATCCTCCTTGTACCTCTGTAttaaaaacgaacaaacaaGTTACAGTCTGAAACATTTCTGAGGTATGTATTGAGAGGACCTCTACTGCACAGCCAAGGAGCTGAGCCGACCATCAGTTGTCGAATCCTTCAGTGTCCTGACTTCCACTCTGCATTAAGATATTGAAacatgtcattttttgtttttgcttttccttttcctgtctTGTTGCATTCAATCATTCCCCATGAGTCCAGTCAGAAGAAGACTCGTGTGACCTTTGTCCTGCATGGTTAATTAGCATTGTTATAACCGATTGCCTCATCCTGAAATGCACAGGCCAGATTTGTCAAACTGTTTACACTGAAGTGCACCATATTTTCCGAAACTAACCCGAATCTGACTGTTAATATTACGAAGCAAATGATGTGTGAGATGAAGGCTTGCATTTCAAAGAAAGTCCATACCTTGAGACTCCTTtacccaaattaaaaaaatgaaatggtgtAATTTACACTTTGGCACCGAACCCTTGATAAATCTCCTCCATGTCGGTCAGTTCTGTATGTAACCTGCTGCAGTGGATCTCATGTTAAATGTTAGCCGTTCTCCACTTGAAACTCGCTGGGGGTGGGTGGGAtgagaaggggtgggggggcttttGTCTGTGAACTTGTCCGTAGAACACTGACCCTGGAGCAAAACCTGAGGGAAACCCCATCACTGATTTGTATAGCACAGATGTATATAACGCAGTCATTAAAAGCCATCTTGTcatttattcttaaataaaatacgTCC

Function

GO:

id name namespace
GO:0007020 microtubule nucleation biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0000922 spindle pole cellular_component

KEGG:

id description
K16570 TUBGCP3, GCP3; gamma-tubulin complex component 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86944 lncRNA upstream 319158 11221070 ~ 11221274 (+) True G69610
TU86875 lncRNA upstream 578503 10959326 ~ 10961929 (+) True G69556
TU86857 lncRNA upstream 702202 10837204 ~ 10838230 (+) True G69540
TU86811 lncRNA upstream 1047036 10493147 ~ 10493396 (+) True G69499
TU86759 lncRNA upstream 1316397 10223671 ~ 10224035 (+) True G69457
TU87041 lncRNA downstream 79213 11641083 ~ 11641452 (+) True G69681
TU87100 lncRNA downstream 157448 11719318 ~ 11722767 (+) True G69722
TU87118 lncRNA downstream 221995 11783865 ~ 11784083 (+) True G69739
TU87160 lncRNA downstream 1038234 12600104 ~ 12600313 (+) True G69778
TU87223 lncRNA downstream 1418389 12980259 ~ 12982434 (+) True G69833
AMCG00014370 mRNA upstream 147027 11392389 ~ 11393405 (+) True AMCG00014370
AMCG00014369 mRNA upstream 319658 11177961 ~ 11220774 (+) True AMCG00014369
AMCG00014361 mRNA upstream 411072 11125399 ~ 11129360 (+) True AMCG00014361
AMCG00014363 mRNA upstream 434582 11097567 ~ 11105850 (+) True AMCG00014363
AMCG00014362 mRNA upstream 453830 11061595 ~ 11086602 (+) True AMCG00014362
AMCG00014373 mRNA downstream 44098 11605968 ~ 11640460 (+) True AMCG00014373
AMCG00014376 mRNA downstream 82158 11644028 ~ 11659546 (+) True AMCG00014376
AMCG00014378 mRNA downstream 106286 11668156 ~ 11678181 (+) True AMCG00014378
AMCG00014377 mRNA downstream 127363 11689233 ~ 11696926 (+) True AMCG00014377
AMCG00014381 mRNA downstream 149528 11711398 ~ 11711931 (+) True AMCG00014381
TU86705 other upstream 1531784 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 4123838 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 4190965 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 6888468 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 2774988 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 4113761 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 4113761 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 4567655 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 4903811 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001015 True 3947 mRNA 0.47 22 NC_007112.7 46405294 ~ 46450270 (+)