RNA id: AMCG00014372


Basic Information

Item Value
RNA id AMCG00014372
length 6923
RNA type mRNA
GC content 0.43
exon number 29
gene id AMCG00014372
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 11459613 ~ 11502601 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atggggggaaaaaaaaaacaatgggaaaGAAAGTGTTTGCCTGTGACTCCAGTGGTCACTAACattggtggtgttgttttgcAGTGTGCTGGAGAAGAGAACTGGGTGGACAATAGGACGGTATACATTGGTCACAAGGAGCCCCCGCCAGGTGCAGAGGCCTACATCCCCCAGAGATACCCCGATAACAGAATTGTCTCCTCCAAGtatACTTTCTGGAACTTCGTGCCGAAAAACCTTTTTGAACAGTTCAGACGAATTGCaaatttttatttccttataaTTTTCCTTGTGCAGTTGATTATTGACACCCCAACTAGTCCCATCACCAGCGGACTCCCGCTCTTCTTTGTGATTACAGTCACAGCTATCAAACAGGGCTATGAGGACTGGCTCAGACATAAAGCAGACAATGCCATTAATCAGTGTCCTGTCCACATCGTTCAGCATGGCAAAGTGGTGAGAAAGCAGAGTCGGAAATTACGGGTTGGAGATATTGTGCTGGTTAAAGAAGATGAAACTTTCCCCTGTGACCTAATCTTCCTGACATCCAGTCGAGACGATGGCACATGCTTTGTCACAACAGCCAGCTTGGACGGAGAATCCAGCCATAAGACCTATTATGCTGTACAAGATACAAAAGCATTCAACACAGAGAAGGAAGTGGACACCCTTAGAGCAACCATTGAATGTGAGCAGCCACAGCCTGACCTCTACAAATTCGTTGGGCGCATTAATATTTATCAGCACCGGGATGAGCCCATTGCAAGGCCTTTGGGCTCTGAAAATCTCCTTCTCAGAGGGGCTACACTGAAGAACACTGAATATATTTATGCCGTCGCCATCTACACTGGCATGGAAACCAAAATGGCCCTGAATTACCAATCCAAATCCCAGAAGCGGTCTGCTGTTGAAAAGTCCATGAATGCTTTCCTCATTGTCTACCTGTGCATCCTGATCAGCAAAGCTCTGATTAACACGGTGCTGAAGTACGTGTGGCAGAGCGACCCAAACAGGGACGAACCCTGGTACAACGAGAAGACGGAATCAGAAAGGCAAAGAAACTTGTTTCTGAGAGCTTTCACAGATTTCTTGGCCTTTATGGTTCTGTTCAACTACATCATCCCTGTGTCCATGTACGTCACCGTGGAGATGCAGAAGTTTTTGGGCTCCTATTTCATCACGTGGGACGATGAGATGTTTGATGAAGAGCTGGGGGAAGGTGCTCTTGTCAACACATCTGATCTTAATGAAGAACTGGGACAGGTTGAATATGTCTTCACGGATAAAACCGGAACTCTGACAGAAAACAACATGGAATTTATTGAGTGCTGTGTAGACGGACATGTGTATATACCACATGCCATTTGTAACGGTCAGATTCTGCAGGGTTCTTCCAGCATTGACATGATCGATTCCTCTCCTGGAAGCGGTGGGAAGGACCGCGAGGAGCTGTTCTTTCGTGCTCTGTGCCTTTGCCACACAGTGCAGGTGAAGGAGGAGGAGTCTGTGGACGGAAATAAGAAGGGCCTCCAGCAATGTGGCAAGTCCTCCTCGGTCTACATCTCCTCATCACCTGATGAAGTGGCCTTGGTGGAAGGCATGAAGAGGCTTGGGTTCACTTACCTGAGGCTGAAGGACAGCTATATGGAAATCCTAAACAGAGAGGATGAAATTGAAAGGCaagtgtttttGTTTGAGTTGCTGGAAGTGCTGAACTTTGACTCTGTTCGGAGGCGAATGAGTGTCATTGTAAGGTCCAGCAAAGGAGAGCATTATCTGTTCTGTAAAGGTGCAGATTCTTCAATATTCCCCAGAGTCCTCTCGGGAAAAGTGGACCAAGTGAGGGCCAGAGTGGAGCACAATGCTGTGGAGGGCTTGCGAACACTGTGTGTTGCCTACAAAGTTCTCTCACTGGAAGAGTACGAAGAGGTCTGCCGAATGCTCAACAGCGCTAAACTGGCTCTGCAGGACAGAGATAAGAAGCTTGCAGAGGCCTATGACGCCATCGAGAAAGATTTTGTTCTGCTGGGAGCAACGGCAGTGGAAGACAGGCTACAGGACAAAGCTGCCGACACTATTGAGTCCTTGCACAAAGCGGGGATGAAGGTGTGGGTCCTGACAGGAGACAAGATGGAGACAGCGGCCGCCACCTGCTACGCCAGTAAGCTTTTCAGAAGGAGCACCCAGATCCTGGAGCTCACTACCAAGAGGACGGAGGAGCAGAGCTTGCACGACGTGCTCTTTGACCTCAGCAAGACTGTCCTCCGCAACCACGGCAGCCTCACCCGGGACACCTTCTCGGGGCTTTCCCAGGACTTTCAGGATTATGGTTTGATTATCGACGGAGCCACCCTGTCTTCAGTCATGAAGCCGGCGGAGGACAGCAGTTCGGGGAACTACAAAGAGATCTTCCTGGAGATCTGCAGGAACTGCAGTGCTGTGCTCTGCTGCCGCATGGCTCCTTTACAAAAAGCACAGATTGTAAAACTGATCAAAGCCTCCAAGGAGCACCCGATCACATTAGCAATTGGAGATGGTGCCAATGATGTCAGCATGATTCTGGAGGCTCATGTTGGTATTGGGATCATGGGAAAAGAGGGCCGTCAAGCAGCAAGGAACAGTGACTATGCAATCCCAAAGTTCAAACACTTGAAGAAGATGCTGCTAGTGCATGGCCATTATTATTACATCAGAATTGCTGAACTCGTGCAATATTTCTTCTACAAGaaTGTCTGCTTCATCTTCCCTCAGTTTTTGTaccagttcttctgtggattctCGCAGCAGccatTGTATGATACTGCATATCTCACACTGTATAATATCAGCTTCACCTCACTTCCTATACTGTTGTACAGTCTCATAGAGCAACATGTTAATATGGACATATTGAAGAGAGACCCCTCATTGTACAGGGACATTGCCAAGAACTCCCTGTTGCGCTGGAGGATATTTATTTACTGGACATTCCTGGGGGTCTTTGATGCAatggtgtttttctttggtGCTTATTTCCTGTTTGATAACACCACTCTGACGAGTAATGGACAGCTAATGACCGCCAACACACACATGATGTTTGGGAACTGGACATTTGGGACTCTGGTCTTCACTGTGCTGGTGTTTACGGTCACACTCAAGCTTGCCTTGGATACACACTACTGGACTTGGATAAACCACTTTGTCATCTGGGGGTCACTGCTTTTCTATGTCATTTTCTCCCTGTTATGGGGAGGCATTATTTGGCCTTTTTTGAACTACCAGAGGATGTACTACGTCTTCATGCAGATGCTGTCCAGTGGTCCTGCGTGGCTGGGCATCATTCTGCTCATCACGGTCAGCCTCCTGCCAGATGTGCTTAAAAAAGTGATCTGCAGACAGCTGTGGCCCACAACAACCGAACAGATTCAGAATGCTGAGAAACTGTACAAGGGAAATCTCTCAGAGTTCACTCCCCTTTCCTCTCGTCAGGCCTCGAAGTACAAGCGCAGCGATGGCCGGAACCCTCACCCCAGAAGGTCTGAGCATCCTTCGAAAAAAATGATGTACACACACTGGGGGGGTGGAGACTATTGCACTTTTAACTCCTTCTTCGGCTTTGCAGATAACTCTCGGAATTCCAGAGCCAGTTACTCATACAGTGGGTCGGGCCTGGAAACCTCCGTTTAAGTTAGACTCTGCTTACTGTACCCATGCCTTTAAAATCACACCGAAACCTTGTGCATTGTCTTACCATCAGCTCTGAACGACTGGTAAGAACATTTTCTGAACTAGATCTCGGCCCTGGGATAATGGGCTAAATTCTCTGGGCTCTTTGTACTACTGAAGTGTAAGAACAAGACAACGCAGTCTGGAACTGCACGCCCCGTGACACTGCAAACCTTCCTGCTCTTGGTGGATGGAGTATCTTTCTGTCTCTTGTCATTTTCTCCGTGGTCTTTCCCACGCTCTAATCTTCATGTGATATTACTTGAATTGAACATTACCACCTGGAGCTTTATGATCAACTGTCTGTTTCATAATGaaaaaccaaaataatgaaatgtctccgaagatttttattttattttttatttttttaatgaaagccgtctgtgtattttgtgtgcttCTTAACTGACTGgcctttttgtttctctctgcctctgtctctttctctcctgcttTTTGTAGAACAAACTGGTGTTGCCTGTGTGCAAACCTTTTATCGAGAAACACACCTTGAGACATTGTCTTATCTACTTGCATTGTAAGTGGCTAGGCCAAGAGATTGGACTGCCAATGCCTAGTTGTTCCCGATATATAAtgatgtgtgcgtgtgtggctATGTGCGTAGAGTAGATTTATGCTGTAACTGGAATGTCAAGTTAGTGAGATGATTAAATCAGTTTGCTCCCTTTATGTACCAATGTCACTGACTAATACTGGCAGatgaaggcttttttttttttattcctacaataatataaataggGAATTCCACTTTTGGTTAGTGAATTGTAGGCCTATTTCCTTTGTTAACAAAGACAACAGACTACAAAATTAGTACATGCAATACCCAGTGAAATGTCTAATATCAGGCTTCATTCATTTAGTATCATGGCTAAATACAGATAAAAGCACATTTGGTATTCACAGTCagacttaaataataataatctgacaATGTATTAATGGTCTTGATTTCACTGTAACAGtgttaaaaaacactttaagaCAACTGGCaccaaagtatatatatatagcaaaacATGAtgttagatttaaaaaaatgtctgtatGGCAGCCAGTTTACATTGCATCATCCTTGTTTCCTCTTCCCTGTGTTTCTCCTCCTGGGCTTTTATAAGATTGATGTCACATCAGTGCTTACTAAAACCTGTAGTTTAATGTAAATGGTGTAAATATATATCTGCAGAGATTCCTGCCTTAATACTACAGCGTTCCCTTCTTGTTACACGGTAGTCTAGAGccaaaggaaaaagaaaaggggaaaaaaagagtcACACCTTTTTAATTTGCCTTACAATTCGAATGCTAGAAGAAAGACATTGTGAAGTACAGGCCCTGGCTAATCCTGTCTTACCACTGGTTCCTTCATCAagacaaatattcaaattgtaaCCCACAAGGGACTCTGTACTGCATGTCAGGATTTCATTGCATACCTAGAAGCTTATATTTGGAAGTTCATTCTTCCATGCGTTTGCTTTATCTTTAGTTTCCTCTCACTGCTGTTACATTAGTACTATTAAGAGCTTGGTAACTGTTCAGTTTCGTCCCTTTGTAGCTAGTTTGCATGGTCTTCCTTAATCAATATTATCTATACCTCCCTGtttattttcccccactgtGAGTGCACTACTCAATTCTCATTTGCAATTTCTAcagtttctttcagtttcttcactgaagtaaactgattttaaagcaattgGGGCAACTGCCCATTCTTATTTCctttcaatgtaaaaaaatatatatttacctaTAACTTGTTCCTGAATCAATGAgaaattaataagaaattgTGATGTAGGACATTCCCAAAACTCAAAGTGGGGCCCTAAACAGGCAAGAATTTATATCATTACGCTGTTCCTGTAAGCATGTGAAATTACACATACTTTatatcattcattcatttacatCCGCtcttatttcttaattttgcttttttctgatTTCCACCCTTTAGCGATGCTAAAGAAGAACCTTTTGCATGATGATTGGCTCAGCCTCTCTTCCACTCCACCTGCTAACCTCTCCGCTAACTGCAGCTTCCTAACCGCCTTCTTTCCATCCATCAACTCATTTAACTCCCTCCTTAGGCTGGACACACAGCTCAAAACAGTAGTAACAGAATGTATGCCAGGGCTGGAGAGTGCTCTGCCGTTATAATAATACCTTGAAGGTTTTTGCACAGACTTTTAGCTGCATCGCAGCAGATGCCTTCTGGTACCGTTTGTATTGTGCTGAATTTAGTaagattttgtgttttgttttctcattgttttcttGACAGGCTTTTAAAGGGAGCCTTGTGAATACACTCGGCTTGTACATAAGCACATGTGACGGAGCATGATCTCTTTCAGTGGTATTTATTTCCAGTAGTCAGTCCAGTTTGTGTGTTGAGTCATGCTTCGTTaaacttgaaaaagaaaatggtaaaactgtatgtgtatatgcatatataatgcATACGCACATATGTATAGAtgccacaaaatgtatttatcaccCTGGTAAAATTTAACTAAAATTTaactaaaatgtaatgcagCAAAGAAAATTAATTGGGTGCATTTAATATTTGTGGACAAATTAATGTGCTGAAATGTATGACtatcaatataatgtatatcaataagtaaaacaaacacatataccttctgtaaatgtaatcctacactgcattttgtaatctgGAAACCATTTGGTTATTTGGAGGATAgaataatgttttactttattaatttttaCCTTATGAATTCAGTGAAGTGGTTTGAGAATCTAATGCAAACCAAGGTTTAACCTCCAGTCATATGTTTGGCTCAGACGAGGTGCAGAACCACAGCCCTCTGTGAAGTATGGACGTGGATCTGTTTTACTGAAGGCCCTTCTTATAACTGAGGAACAAATGGATTAGCTTTGCCAGGTTGTTATAGCcaattaggttttattttaggcCTAAAACCTGGGCACACATTGattttccagcaggataatgattTTATCCACACATTCAAGTATACATCCAAATGCTTAATGGAGaataaaatcaatgttcttGATTGTCCATTAAAATCTACACACCTCAGTCCAGTACAAAGTGAATGGTATGACCTGAAAAAAGCAGTTTACAAATGGAAGCCCTGGAGCTGCTTTGGAGGAAGTGGACAGGTTCTGCATAGACG

Function

GO: NA

KEGG:

id description
K01530 E7.6.2.1; phospholipid-translocating ATPase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86933 lncRNA downstream 322527 11132788 ~ 11137086 (-) False AMCG00014365
TU86856 lncRNA downstream 638541 10815771 ~ 10821072 (-) True G69539
TU86853 lncRNA downstream 663424 10795883 ~ 10796189 (-) True G69536
TU86852 lncRNA downstream 666467 10792919 ~ 10793146 (-) True G69535
TU86849 lncRNA downstream 682172 10777051 ~ 10777441 (-) True G69532
TU87123 lncRNA upstream 267089 11769690 ~ 11771393 (-) True G69743
TU87141 lncRNA upstream 376496 11879097 ~ 11880456 (-) True G69759
TU87239 lncRNA upstream 1467652 12970253 ~ 12970555 (-) True G69849
TU87308 lncRNA upstream 1582762 13085363 ~ 13086345 (-) True G69896
TU87309 lncRNA upstream 1582762 13085363 ~ 13086345 (-) False G69896
AMCG00014367 mRNA downstream 284171 11167640 ~ 11175442 (-) True AMCG00014367
AMCG00014366 mRNA downstream 314788 11139452 ~ 11144825 (-) True AMCG00014366
AMCG00014365 mRNA downstream 322537 11125029 ~ 11137076 (-) True AMCG00014365
AMCG00014368 mRNA downstream 337782 11104978 ~ 11121831 (-) True AMCG00014368
AMCG00014364 mRNA downstream 363180 11088747 ~ 11096433 (-) True AMCG00014364
AMCG00014374 mRNA upstream 157410 11660011 ~ 11667537 (-) True AMCG00014374
AMCG00014380 mRNA upstream 194588 11697189 ~ 11722453 (-) True AMCG00014380
AMCG00014379 mRNA upstream 247590 11750191 ~ 11755461 (-) True AMCG00014379
AMCG00014385 mRNA upstream 364010 11866611 ~ 11867529 (-) True AMCG00014385
AMCG00014386 mRNA upstream 379894 11882495 ~ 11891473 (-) True AMCG00014386
TU86854 other downstream 661466 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 2142446 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 3075389 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 3301023 8156229 ~ 8158590 (-) True AMCG00014298
TU86293 other downstream 3320487 8137331 ~ 8139126 (-) False AMCG00014297
TU87063 other upstream 157420 11660021 ~ 11662493 (-) False AMCG00014374
TU90285 other upstream 16827138 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 17886689 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 20760566 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 21094861 32597462 ~ 32614806 (-) True G73127

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000119_01956805_01994102.mRNA True 4313 mRNA 0.48 32 CI01000119 1956805 ~ 1994440 (+)