RNA id: TU87063


Basic Information

Item Value
RNA id TU87063
length 1788
RNA type TUCP
GC content 0.36
exon number 3
gene id AMCG00014374
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 11660011 ~ 11667537 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAGCATGGAGATCAATGAGGACGAAAACACCATAATATTTACTACGAAGTGCCCATGTGACGAGTGTGTGCCTTTGATCAAGGGCTCTGGAATCAAACAGATCTACACGGCGGATCTGGACAGTGGGAAAGACAAGGACGACATATCTTACCTCCGCTTTGACCGTCTCCAGGGTGTTCACAAGTTCACGTGGCAGAGAGAGAAACCGGATGGATGTGTCCTGGATCAAAGTCCGACGGCACTGAAAGCTAATGGTATCCTGGGGAAGCACAGCAGACAAGTGCGACAAGAAAGCTGGACCAACAAGAAGCCCTGTGTGCAGGACAAATGAAAAGGCTGTTTTAGCACTGGACAGGTATTGGGAAAAGTTCTACACAACCAGCCTGGGAGAAAAAATGGATATCTGTGTCAGCAAATCTGCCCACCCTTTATAATCATGTGCAATTTATAACCATGTATGTGCTCAAATATTGGGAATAGTAAAGATACCTCATGCAAGTTGGCTTTTTAAATAGCCCGTCTTCCAAATATCAACCTGCAGTAAATACCACcatatttgtatattacataattttcctgtcatttaacaaatacttttatacatttgaatcaCCCAATCAACAGATCGCAATGGGGAGAGCATTGtgtttaataacaatataagCATCTCTGCCCGTgaatctattttgttttgtaatttaccAGTCATATTGGTAACGGTTTATATCGCAGAGAGtgcaaaatacattatgaaCCAAAGCCTAATCAGCTCTAAAATGGTTAAATACAACTAGTGTGCAGTcctatttaaatgtaaccataTTGTTTTACTCTAGTAAAGAGTACTTCATTTAAGACGGTATGCCTGAAAGATGTTGTATGGTTCCTGTAAACATCAAATGCTGTCATTCCAATCTTTTTGAGAAAATAAGGTCCCCAAACCAGAGACTGATCTTTCAAAGCTTAGTCCCAACCTAACCATGATTAACAACATAGACTGAAACTACAGAAAACACAGTCTGGGCAAATCATATTTCTCTTTGATAAATAGTCTGAGGtccttttacattgttttttgttcagaatcccttttgttttcatttttatttagtgtctttttaaattatgtctCTGATTCAGAATGGACAATTGCTCCAGTGTAATTCAGATAATGTCACACTATCTCTGGCAGTATGAATGATGTGTGTTACACTGTAAATTCTCAGCCAGTACGTTTACTAAGGTGCTTGTTATTAAggattcattttaaagcatgtcTAATTTAACCTTTATTGATACATAATGCTTTCTCAAGATgtactaaattaataaaacaaatatctgaagCTGGATTTGGAACAGACTAAATACTTCATTTACTGCAatggtaaatacatttaaacttgtGTGTGCTCATACTTGAAAACCAGGAATaggtatttgtatattttcccACAAAGTTACCTGGGCATTTGTGGGACTGGGCGTTACTACACAGAGGTACCTTATATGTTTGAACATCTATTTCCCTTGTTGATTCACTGATTATGTTTGAGTATTTCAGGAGGGttaaatgtttgcttatttgaAGTGaagtctaaaaatgtttttattaaatgtttatatatttgtggaTCACAATTTATAGTGCGGTGTTAATTTAATGGGTAAAGTAAAAATAGattgttttaagtttgaatGATTTATCTTGTGACTCTTATTGTTATAGTCAGACATTGAGGTTTCAGTAGTGGCTACTCAAACTTCTGTCTCATATATTCCGGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86933 lncRNA downstream 522935 11132788 ~ 11137086 (-) False AMCG00014365
TU86856 lncRNA downstream 838949 10815771 ~ 10821072 (-) True G69539
TU86853 lncRNA downstream 863832 10795883 ~ 10796189 (-) True G69536
TU86852 lncRNA downstream 866875 10792919 ~ 10793146 (-) True G69535
TU86849 lncRNA downstream 882580 10777051 ~ 10777441 (-) True G69532
TU87123 lncRNA upstream 107197 11769690 ~ 11771393 (-) True G69743
TU87141 lncRNA upstream 216604 11879097 ~ 11880456 (-) True G69759
TU87239 lncRNA upstream 1307760 12970253 ~ 12970555 (-) True G69849
TU87308 lncRNA upstream 1422870 13085363 ~ 13086345 (-) True G69896
TU87309 lncRNA upstream 1422870 13085363 ~ 13086345 (-) False G69896
AMCG00014372 mRNA downstream 157420 11459613 ~ 11502601 (-) True AMCG00014372
AMCG00014367 mRNA downstream 484579 11167640 ~ 11175442 (-) True AMCG00014367
AMCG00014366 mRNA downstream 515196 11139452 ~ 11144825 (-) True AMCG00014366
AMCG00014365 mRNA downstream 522945 11125029 ~ 11137076 (-) True AMCG00014365
AMCG00014368 mRNA downstream 538190 11104978 ~ 11121831 (-) True AMCG00014368
AMCG00014380 mRNA upstream 34696 11697189 ~ 11722453 (-) True AMCG00014380
AMCG00014379 mRNA upstream 87698 11750191 ~ 11755461 (-) True AMCG00014379
AMCG00014385 mRNA upstream 204118 11866611 ~ 11867529 (-) True AMCG00014385
AMCG00014386 mRNA upstream 220002 11882495 ~ 11891473 (-) True AMCG00014386
AMCG00014384 mRNA upstream 231267 11893760 ~ 11895883 (-) True AMCG00014384
TU86854 other downstream 861874 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 2342854 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 3275797 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 3501431 8156229 ~ 8158590 (-) True AMCG00014298
TU86293 other downstream 3520895 8137331 ~ 8139126 (-) False AMCG00014297
TU90285 other upstream 16667246 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 17726797 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 20600674 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 20934969 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 20934969 32597462 ~ 32619149 (-) False G73127

Expression Profile