RNA id: AMCG00014375



Basic Information


Item Value
RNA id AMCG00014375
length 825
RNA type mRNA
GC content 0.54
exon number 2
gene id AMCG00014375
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 11766428 ~ 11767590 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


atgagtAACCAAGAAATTATCACATTAAACGTTGGGGGGGAAACATTTACAACACTTGTGTCAACTCTAAATAAATATCCAGAAGCCAGACTGGCACGCATGCTGGACGGCAGTGACCCGGAATTTCGAGTGGGGAATGGGCACTATTTCGTGGACAGGGATGGGACTCTGTTTAAACACATCTTAGACTATATCCGCAATGGCCAGCTCTCCCTGCCTGCGGATTTCTTCGACTACCCGGGGCTGATCCGAGAAGCCGAGTTCTACGGACTGCCCAAGCTGGCGGAGCTCCTGAGCCAAGAGGGCAGCCGCCCGAGGCTGGAGATCCTGGAGGTGCGCTTCTCGGTGCAGGAGGCGCACGGCTTCTTCAGGGTTTTCTGCTCTCAAAGCAGCACCGTGGAAATGCTGGCTTCGAGGATTTCCGTGTATGCCGAGCAGCCGGCCTTAAACTGGAATTACCCCCACCAAGGCCACAAGCCCATGGCACCGGTGCCCCTGCTGAGACCTTCCCACCACGACCTGGTTTTCCAGTGCGGCACCGACTACTCCGCCGGGGACGAGTTTGCGGCGAGGTATGTTACAGTGCAGCCCGACGAGAGGAAGTTAATAAACGGCACCAATGTCCTGGGTTTACTAGTGGACATACTTCTGAAGGAGGGATTCCGCCTCATCAGCACAAGGACCATCTCTGCGGAGGAAAAGGTCGAGTGTTACACGTTTGAAAGAGTCAAGAGAGCCCCGGTTCTCATTGGGAACAACGGCGATAAAGCAGAGCACACCTTTATTCACCCCAAAAAGCACGGCAGACCTACCCGAAAGAGATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU87100 lncRNA upstream 43661 11719318 ~ 11722767 (+) True G69722
TU87041 lncRNA upstream 124976 11641083 ~ 11641452 (+) True G69681
TU86944 lncRNA upstream 545154 11221070 ~ 11221274 (+) True G69610
TU86875 lncRNA upstream 804499 10959326 ~ 10961929 (+) True G69556
TU86857 lncRNA upstream 928198 10837204 ~ 10838230 (+) True G69540
TU87118 lncRNA downstream 16275 11783865 ~ 11784083 (+) True G69739
TU87160 lncRNA downstream 832514 12600104 ~ 12600313 (+) True G69778
TU87223 lncRNA downstream 1212669 12980259 ~ 12982434 (+) True G69833
TU87357 lncRNA downstream 1478719 13246309 ~ 13251732 (+) True AMCG00014407
TU87358 lncRNA downstream 1478719 13246309 ~ 13251732 (+) False AMCG00014407
AMCG00014382 mRNA upstream 4527 11759901 ~ 11761901 (+) True AMCG00014382
AMCG00014381 mRNA upstream 54497 11711398 ~ 11711931 (+) True AMCG00014381
AMCG00014377 mRNA upstream 69502 11689233 ~ 11696926 (+) True AMCG00014377
AMCG00014378 mRNA upstream 88247 11668156 ~ 11678181 (+) True AMCG00014378
AMCG00014376 mRNA upstream 106882 11644028 ~ 11659546 (+) True AMCG00014376
AMCG00014383 mRNA downstream 102435 11870025 ~ 11877714 (+) True AMCG00014383
AMCG00014387 mRNA downstream 132932 11900522 ~ 11901421 (+) True AMCG00014387
AMCG00014388 mRNA downstream 175985 11943575 ~ 11944826 (+) True AMCG00014388
AMCG00014394 mRNA downstream 1055963 12823553 ~ 12834319 (+) True AMCG00014394
AMCG00014393 mRNA downstream 1067360 12834950 ~ 12841128 (+) True AMCG00014393
TU86705 other upstream 1757780 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 4349834 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 4416961 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 7114464 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 2569268 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 3908041 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 3908041 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 4361935 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 4698091 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile