RNA id: AMCG00014377


Basic Information

Item Value
RNA id AMCG00014377
length 1481
RNA type mRNA
GC content 0.47
exon number 12
gene id AMCG00014377
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 11689233 ~ 11696926 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagggcagtgcGGGCAGTGAAGTGCGGGCAGTGAAGTGCGGCAGGGCAGTGCGGCAGGGCAGTGAAGTGCGGGCAGTGAAGTGCGGCAGGGCAGTGAAGTGCGGCAGGGCAGTGCGGCAGGGCAGTGAAGTGCGGCAGGGCAGTGCGGCAGGCCGCGGGATGTCCAGGACGCCTGTGAGGTGCGGGTTCTGCTGCTCCAGCCAGGAGACGCGAGAGACCGGGCCGCTGCTGAGGCAGGGCAGCGTGGTGGCGCACAATATGTGCATGTTATTTTCTTCTGGGATCGTTACCAAGGAGTCTCCTCGAAGTTCTCTGGCAGGATTTCTGGAAGATGACGTGAGAAAGGAAATGAACCGGGGGAAGAGACTGAGATGCTTCCGATGTAAGAAGAATGGTGCGACTGTTGGGTGTGAGGTACCAAAGTGCAAAAGGTCTTATCATTACCTGTGTGCCCTAAAGGATGGCGCTAAAAAAGTGGAGGATGACAATGAAGGTATTTTTAAgaTTTACTGCGTCCAGCATCTTGAATATGAAGAGACTAAAGCAGATAGTCTCCCCGAGTCGACTCAGGATTCTGAGGCAGAGTATAtggaagatgaagatgaagatgttACTGATGATAGTGAGGATGAAGTGAGGAGCAAAACCAAGAGAAAGAAGCCCAGTACAGTACTTAGGAgtgcaagtaaaaaaaacaggacagagAATGCGAACAACAGCAGTAGCAGAGATGATGAATTGAGGGGCAAAGgcgGAAGTGACTCCAGTGAATTCGAACTCGTCTCTGAGGAAAGGGAAGGAGCCATTAATCCCAGGAACGACACAGCCAACCGTAGATTAAGTTACACAGAAGAAGACCCAGAGAGTGAATCTCTACAAACCGGGAATCCAGCCTCCTTCTGGAGGAAGTGCCGGGAGGCTGGGTGTGTGGAAAAGATCTTCTCGGAGTTGATTTTAGCCATGACCGCTGTTTCAGAGAAAATAAGCACTGACCAGGCCGATGATGAAGAAAATGCCTTTTCTTTGAAAATCCTGCAAGCGTCTGGGATGTTATCACGCATACTTGAAGAGAAGGATAACGAATTCAAGGAGAGACTGGAAAAACTTCAAAGGGAACGAGATAAGGTGATTATCTCAAACCAAGCAGTGGATGAACTGAGACATATGTTACACAATATCCAGCCTTGACTGAGCAGGACTGGTGCTGGGTCAGGCTTATATCTGCTCTAATACTACACCTGTAGTACTAAAATCAATCTCCATCCAATAGCTAgataacagaaataataaagagTATAATTGTCTTTGTCAGgtaaatagatttgttttttaatgtcttatttTCTCCAGTGGTGTAATGGATTTTTtagttctgttatttttttgtgttattagtaAAACTGGCACTAGTAGGATCTATTCCTTAcagaaactttattttcttacatgttTGCATGCACTTTTAGTAATAAACTGTTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87041 lncRNA upstream 47781 11641083 ~ 11641452 (+) True G69681
TU86944 lncRNA upstream 467959 11221070 ~ 11221274 (+) True G69610
TU86875 lncRNA upstream 727304 10959326 ~ 10961929 (+) True G69556
TU86857 lncRNA upstream 851003 10837204 ~ 10838230 (+) True G69540
TU86811 lncRNA upstream 1195837 10493147 ~ 10493396 (+) True G69499
TU87100 lncRNA downstream 22392 11719318 ~ 11722767 (+) True G69722
TU87118 lncRNA downstream 86939 11783865 ~ 11784083 (+) True G69739
TU87160 lncRNA downstream 903178 12600104 ~ 12600313 (+) True G69778
TU87223 lncRNA downstream 1283333 12980259 ~ 12982434 (+) True G69833
TU87357 lncRNA downstream 1549383 13246309 ~ 13251732 (+) True AMCG00014407
AMCG00014378 mRNA upstream 11052 11668156 ~ 11678181 (+) True AMCG00014378
AMCG00014376 mRNA upstream 29687 11644028 ~ 11659546 (+) True AMCG00014376
AMCG00014373 mRNA upstream 48773 11605968 ~ 11640460 (+) True AMCG00014373
AMCG00014371 mRNA upstream 127363 11540432 ~ 11561870 (+) True AMCG00014371
AMCG00014370 mRNA upstream 295828 11392389 ~ 11393405 (+) True AMCG00014370
AMCG00014381 mRNA downstream 14472 11711398 ~ 11711931 (+) True AMCG00014381
AMCG00014382 mRNA downstream 62975 11759901 ~ 11761901 (+) True AMCG00014382
AMCG00014375 mRNA downstream 69502 11766428 ~ 11767590 (+) True AMCG00014375
AMCG00014383 mRNA downstream 173099 11870025 ~ 11877714 (+) True AMCG00014383
AMCG00014387 mRNA downstream 203596 11900522 ~ 11901421 (+) True AMCG00014387
TU86705 other upstream 1680585 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 4272639 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 4339766 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 7037269 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 2639932 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 3978705 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 3978705 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 4432599 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 4768755 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile