RNA id: AMCG00014379


Basic Information

Item Value
RNA id AMCG00014379
length 1821
RNA type mRNA
GC content 0.40
exon number 5
gene id AMCG00014379
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 11750191 ~ 11755461 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACGCCGGGATCCGCGCCCGCTGCCGCTCCGCCAGGGGGCGCTGTCACTCTGACGAGACACTGCTTTTGTGAGCTCCTCTTTGGCCGGTGAGGACGGGCCGGATTTATTTCCGGAGAGAGGAGAAAGTGTGGCGTCGGACTGTCATGGCCTCAGTTTTCTGCTGCTGTCTGAGATGCTGCGGGGACGGGGGGTCTGGACATATCCCCCTGAAGGAGATGCCCGCGGTGCAGCTGGACACACAGCACATGGGAACGGACGTTGTCATCGTGAAAAGTGGGAGAAGAATATGTGGCACGGGAGGCTGTCTGGCCAATGCTCCGTTGCACCAGAATAagagttattttgaatttaaaatccaGTCCACAGGGGTGTGGGGCATTGGGGTAGCTACACAGAAAGTCAACCTGAACCAAATTCCTATGGGGCGGGATATCTACAGCCTGGTCCTCAGGCATGACGGCTCTGTGTATCACAACAACGAGGAGAAGAACAGGCTTCCTGCCAACAGCATACCCCAGGAGGGAGACATAGTGGGTATCACGTATGACCATGTGGAACTTAATTTATACTTGAATGGAAAGAATATGCATTGTCCAGCTTCAGGAATTCGCGGAACAGTGTTTCCTGTAGTATATGTGGATGACAGTGCCATATTGGACTGCCAGTTCAGTGACTTCTACCACACAGCACCTCAAGGGTTTGAGAAGATATTATTTGAACAGCAGATCTTCTAACCAACACTACGCCTCTTTAGTGATACCCTGCACTGTTCTGaagctttttgtttgtatgtttctaCAAAGCTTTGTGGCTTGTTTTTTGTCCAGTGTGTGTTGAGTAttcctctgtgtgttttatacGCCAGTCACGTACCTCCAGTGTACACTGTCTGGTAGTCAGTTGGTGGAGTCtaggttttaaaatacacttaccTCTCTACAGAAGCCatgttttgttgctttatttaaaaggtACTGTATTGTAATGTGACTACTGTTTGCCAGTCATGCTCTTTAAACTGTTTTTGGAGACAATGCAAACCTATTGTTAAATAAGCAAACTATTCTTATTTTGTCAAGACATATGATGCCCCTAATGTGTAGAGACAAGACTTTCACAGTTCACGTTATTTAGAATAAttgcctttcttttcttttatgtcTGTCAAGCTAAATCAGTAGGTTTAATATCACTATTAAGGTTATATAGGTTATAAAGCCTTTGAACATATCAGTTATTTGCATATCAGTCTTGAAACTTTTTTTCCATCCTGATCCATGTTCtataaataacagataacagTTTGTGTTGTTGAAATGTTTCACTTATTGAAGAGCTTTCAtttattcaatataaatgtgtattaattcTTATATCTCATGTTATACACACATTGGGCAATGATACTTAAATTAACCTTCATGCACAATTTTGTGTAATTGTGAGTTTTTACAACTCTGcaaataatattgtatacaaCATGTATATGTGCctgtgtgaaatatatacacattgaatctttctttatttctttactcCACTCGTTTCACAACATTTGACACAGAAAGCCAAAACCTCAATCTAAAACGAAATCTTGATATTAACAAATTAGCTGAGCACGGTTTCCATTCATTTAACAGTTATTGACAggcttacatttttatttgtattttgtcccgtactgaaatgcatacgaccaactgtttttttttgtgtgtgttgaaatTCATTGGTTGTAAATGTTTCAGATGatggtgttttgtttgcactgatGAAATGTGAGTGTTAAGTATTCAAAAAATCTACAATTTTATGGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86933 lncRNA downstream 613105 11132788 ~ 11137086 (-) False AMCG00014365
TU86856 lncRNA downstream 929119 10815771 ~ 10821072 (-) True G69539
TU86853 lncRNA downstream 954002 10795883 ~ 10796189 (-) True G69536
TU86852 lncRNA downstream 957045 10792919 ~ 10793146 (-) True G69535
TU86849 lncRNA downstream 972750 10777051 ~ 10777441 (-) True G69532
TU87123 lncRNA upstream 14229 11769690 ~ 11771393 (-) True G69743
TU87141 lncRNA upstream 123636 11879097 ~ 11880456 (-) True G69759
TU87239 lncRNA upstream 1214792 12970253 ~ 12970555 (-) True G69849
TU87308 lncRNA upstream 1329902 13085363 ~ 13086345 (-) True G69896
TU87309 lncRNA upstream 1329902 13085363 ~ 13086345 (-) False G69896
AMCG00014380 mRNA downstream 27738 11697189 ~ 11722453 (-) True AMCG00014380
AMCG00014374 mRNA downstream 82654 11660011 ~ 11667537 (-) True AMCG00014374
AMCG00014372 mRNA downstream 247590 11459613 ~ 11502601 (-) True AMCG00014372
AMCG00014367 mRNA downstream 574749 11167640 ~ 11175442 (-) True AMCG00014367
AMCG00014366 mRNA downstream 605366 11139452 ~ 11144825 (-) True AMCG00014366
AMCG00014385 mRNA upstream 111150 11866611 ~ 11867529 (-) True AMCG00014385
AMCG00014386 mRNA upstream 127034 11882495 ~ 11891473 (-) True AMCG00014386
AMCG00014384 mRNA upstream 138299 11893760 ~ 11895883 (-) True AMCG00014384
AMCG00014390 mRNA upstream 228612 11984073 ~ 12003809 (-) True AMCG00014390
AMCG00014391 mRNA upstream 441578 12197039 ~ 12199190 (-) True AMCG00014391
TU87063 other downstream 87698 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 952044 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 2433024 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 3365967 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 3591601 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 16574278 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 17633829 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 20507706 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 20842001 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 20842001 32597462 ~ 32619149 (-) False G73127

Expression Profile