RNA id: AMCG00014380


Basic Information

Item Value
RNA id AMCG00014380
length 4329
RNA type mRNA
GC content 0.48
exon number 18
gene id AMCG00014380
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 11697189 ~ 11722453 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTTCTAAAAAATAAAAGCCTCTTGTCAGTCACTCTGCAGTTGCCAAACGTTGCTATCACACAGACTAAGGATTACCTGAATAAAATGTCCTCCTTCTCAGAAGAGCCCACTTTGCTCGGCCCCGTCACCGTGTACTGCCTGCTGGCCTGCGGCGTGCAGCTCGCAGTGGGCTACGCGCTTGCGCAGCTGTGGGGGCGGAGGTGCTCTGGAGTGGACAGGTGGATCCTAGTCTGGCTGATCTATGATGCCATCGTGCATTTCACCCTGGAGGGTCCTTTTGTGTACCTTTCTCTAGTTGGAACAGTGGCAACCTCAGATAGTATTTTTGCTGAATTATGGAAAGAATATGGAAAGGCTGATGAGAGATGGCTCCATTCAGATCCCACAATCGTATCCCTGGAGTTGCTGACTGTAATTGTAGACGGCTTTCTAGCCCTTGTCTTGGTTTATGCCATCGTCAAGGACAAATACTACAGGCACTTTGTCCAGAtcacactgtgtgtctgtgagctgTATGGTGGATGGATGACCTTCTGCCCTGACTGGCTGGTTGGCAGCCCCAACCTGAACACCAGCAACTGGCTCTACCTCTGGGTGTACCTGGCGTTCTTCAATGGGATCTGGGTCATTGTGCCCGCGATGCTGCTATGGCAATCGTGGGGGGCACTGCGGAGAATGCACCAACCGCTGCTCAGGAAGTCTGAAAGGAAGCTGGGGAGCGCTAGCCTGTTGGAAATGTCCTGGATGGTCAGTGAGTTGGGAAGGTCCTTCTTGTTGGCCAGGACCAGTAAGGGGACCTTGTTCATGTTTTCATCATTCAAGACCTGCTTCAGGGCCTTCTTAGCCTCGTCCAGCCTGGAAGCATCAGCACCGTCCACCACAAACACCAGAATGTCACAATCTTCCAAGAGCTGCAGCAATGAGCACCCCCCTTCCTGGCTGGTGTGTGTGAGGAGTACAGCCATGGTGGATGTGAGCAAGTGGCCTCTGTTCACTCTGCTGTCATCGCAAGAGATCGCTTCAGTCCGGCAGGCTTGCGTCTTCGGCACGTCTGCTAATGAAGCCATATACATCACCCACAATGATGAGgtgtttgtttttgggtTGAATTACAGTAACTGTTTAGGGACAGGTGACAACCAGAGTACCATCGTGCCAAAGAAGCTGGACAGTCTGTGTGGGAAGAAGATTGTCAGTCTGGGCTATGGCAGTGGTCCACATGTGATACTCGCTACTGAAGATGGAGAGATGTACGCGTGGGGGCACAATGGGTATAGTCAAATAGGTAACGGGACTACAAACCAGGGAATCTCTCCCATCCACGTGTCTGCCAATCTGCTCAACAAGAAGGTGACGGAGGTGACCTGTGGCTCCCATCACTCTCTGGCACTTACATCTGAAGGCGAGGTCTATGCATGggggtacaacaactgtggccAAGTTGGATCAGGATCTACCGCCAATCAGCCTACACCTCGCAAAGTGTCCAACtgcctgcaaaacaaaatcGTGGTCAGCATCACCTGTGGTCAGACTTCCTCTATGGCTGTGGTAGACAATGGAGAGGTGTACGGATGGGGCTACAATGGAAATGGCCAGCTGGGTTTGGGCAACAATGGAAACCAGCTGACCCCCTGTCGCCTGGCAGCCCTGCAGGGCGTGTGTGTGCTGCAGATTGCGTCTGGCTATGCACACTCACTCGCACTAACAGATGAGGGGTTGCTGTATGCCTGGGGAGCTAACACCTATGGCCAGCTGGGCACGGGCACTAAGAGTAACCAGCTTAGCCCTTTACAGATTATGACCGACAAGGAGAGCAGGATTGTAGAGGTCGCAGCCTgccactccacacacacatcagcAGCCAAGACGCAGAGCGGCCAGGTGTACATGTGGGGCCAGTGCCGGGGCCAGTCCGTGGTTCTGCCACATCTGACCTACTTCTCCTGCACCGACGATGTGTTCGCCTGCTTCGCCACCCCCCCCGTCATGTGGCGGGTGCTCTCTGTGGAGCACGATGACTTCCTGACAGTCGCACAGTCCTTGAAGAAGGAGTTTGACAGCCCTGAAACGTCAGACCTCAAGTTCAGTGTCGATGGGAAATACATTCATGTCCACAAAGCCGTACTTAAAATAAGgtGTGAACACTTCCGCTCCATGTTCCAGTCTCACTGGAATGAAGATATGAAGGAAGTGATTGAGATTGATCAATTTTCTTACCCTGTGTATCGCTCCTTTCTGGAGTACCTGTACACGGACAATGTGGATCTTCCTCCAGAAGATGCCATTGGGCTCCTGGATCTGGCCACGTCGTACTGTGAGAACCGTCTGAAGAAGCTGTGTCAGCACATTATCAAGAGGGGCATCACTGTGGAGAACGCCTTCTCTCTGCTTTCAGCTGCTGTCAGATACGACGCTGAGGATTTGGAAGAGTTTTGCTTCAAGTTTTGTGTGAACCACTTGACAGAAGTCACTCAGACGACAGCTTTCTGGCAGATCGACGGCGCGCTGCTGAAAGAATTCATTTCCAAAGCCAGTAAATGTGGAGCCTTTAAGAACTGAAATGGACATCTCCTCGGGGTGTCACTGCAAAACAGAAGACCACCCACCTCAGCCAGGGGTCTCGGCCCTCCAGCCAGGCCTCCAGGTGTCCGTTGCTTTGGGCTGACAAGCGGCTGTGTATGAAGTTATCCACAAGGACTTTTTCCAGTGAAGAAATTGTAGCACGATCCCTATATTAAGGGAGGAATCTATATAACGTCAATGAACCACATCGACTCTATATCTTGAACCTTTGTTTTCAGGGAGTATTGTAAGAGAGAGTTTCTTTTCCCtttggatattttatttttttattttttgctataCTATTATACTGTTTAGCAGACATATTAAGGGGTGATTGCACTAACTATAAAATATACTTTCTCTTTATCCTCCCCATTGAATTAAGCCTGTAACGGCGTTCAGTGATGGCCGCCCAGCTTTCCAACACGAGCCGTATTCAGGAGGGCGGCTGTGATCCTTTCTTCATGGCTCAGTGGTTGTCACACTTGCTGGTTCAGCGGGAGGTAAATGCCATCCCTCCAGGGACGGGATCAGTGTGGCTTGTTAGCAGACTGGCAGTGGATGTTGTTAGTAAAGACCCAGTGGTTCAACTACGAGACGTCTGCTGTCACTCGGGCCACCGATTACTTGTCTGCAACGAAAACTCGGCTGAAGACAGCGTTGCCTTTTATGAGTTAAACACAACAGAGCTTCTGCCCCAGCCTGCATACCAATGCCAGCATGTTGACCTAATTCCCAGAAAACTGCACATATCAACAAAGAGGTCTCTGCTGCGGTCAGTGTTTTTTGGGAAAGTGTGTATTATATGGAGACAGCCTGACCGCAGCCCTGGAGCAGGCTGGATTCTGTCTGACTGGATATCGAAGACGTAGGCCACAAGACATGTGATCTGTACTATCTGACGCTCCTTTCTTCTGGTATTTTATCCTCTGAATGTGCTTGTCCTTTAACGAGGGCTTTACAAATCAGCTATAGATTACATGCTCTATTAAATACCGTTGTGATTCTCCCAGATCACAGTACCGGGGACTCACTCTTCACACCTGCTTTGTTATCTGGTCCTTCTATGTTTTGGTAAATTAAGTTTCCAGTCACTGGTCCGATAGTAAACCAGTCTGTACTGAAAGGCAACATGTGAATACACATTACCATGTTTACAGGTCATGCCTCAGAGGTGAGTTTGGTGAAAATAAAAGCCATTGACAAATGTTTCATATAAATTTGGGGAAAGTGAGAACCAAAATGTTTACTATAGCAGTGTGGAAATAAACTTAAGATCACATGTAATTCAGTTATCATTCCTTCACTTTGTGTGTGGATATGAAAGGTATGGTCAAACTGTGCACAGTATTTGATCACCCTTGTGTATGACAACTGGGCCCAAATGTTAATTCGAAGGCATAGAACTCTAAATAATTACTTTccatttttctgaaaatgctCCTAGTCCTGTATAAAATCTCTCACAAATTGGAGTAAATCCAAGGTCCACTGCAGTCCTCTTTTCTGAGAGATTCAGCATATTCCTAAAATTGACAGGAAATCAGATTTTTGCCttgcttctgtgtttttttttctttctagtttGTGTCCCTGAATGAATAGCTTTGTCTGCAATTCATGGATGAATAGGTGTTTAATTGATTATCTGACCAGTTAAGCACACTGTTAATAATATACAGCCTTTCAAATATGCTATATGAGAATCTATTTAGTGTGTATTACTATTGTAGCCAAATAAATGATTGTGAATTGACC

Function

GO: NA

KEGG:

id description
K11494 RCBTB; RCC1 and BTB domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86933 lncRNA downstream 560103 11132788 ~ 11137086 (-) False AMCG00014365
TU86856 lncRNA downstream 876117 10815771 ~ 10821072 (-) True G69539
TU86853 lncRNA downstream 901000 10795883 ~ 10796189 (-) True G69536
TU86852 lncRNA downstream 904043 10792919 ~ 10793146 (-) True G69535
TU86849 lncRNA downstream 919748 10777051 ~ 10777441 (-) True G69532
TU87123 lncRNA upstream 47237 11769690 ~ 11771393 (-) True G69743
TU87141 lncRNA upstream 156644 11879097 ~ 11880456 (-) True G69759
TU87239 lncRNA upstream 1247800 12970253 ~ 12970555 (-) True G69849
TU87308 lncRNA upstream 1362910 13085363 ~ 13086345 (-) True G69896
TU87309 lncRNA upstream 1362910 13085363 ~ 13086345 (-) False G69896
AMCG00014374 mRNA downstream 29652 11660011 ~ 11667537 (-) True AMCG00014374
AMCG00014372 mRNA downstream 194588 11459613 ~ 11502601 (-) True AMCG00014372
AMCG00014367 mRNA downstream 521747 11167640 ~ 11175442 (-) True AMCG00014367
AMCG00014366 mRNA downstream 552364 11139452 ~ 11144825 (-) True AMCG00014366
AMCG00014365 mRNA downstream 560113 11125029 ~ 11137076 (-) True AMCG00014365
AMCG00014379 mRNA upstream 27738 11750191 ~ 11755461 (-) True AMCG00014379
AMCG00014385 mRNA upstream 144158 11866611 ~ 11867529 (-) True AMCG00014385
AMCG00014386 mRNA upstream 160042 11882495 ~ 11891473 (-) True AMCG00014386
AMCG00014384 mRNA upstream 171307 11893760 ~ 11895883 (-) True AMCG00014384
AMCG00014390 mRNA upstream 261620 11984073 ~ 12003809 (-) True AMCG00014390
TU87063 other downstream 34696 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 899042 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 2380022 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 3312965 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 3538599 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 16607286 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 17666837 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 20540714 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 20875009 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 20875009 32597462 ~ 32619149 (-) False G73127

Expression Profile