RNA id: AMCG00014386


Basic Information

Item Value
RNA id AMCG00014386
length 2016
RNA type mRNA
GC content 0.51
exon number 13
gene id AMCG00014386
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 11882495 ~ 11891473 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATGGGTTCATAAATACCTGCCTTAAGTCTCTGGTTGTTGAAAAATTTGGGGAGGAAACATGGGAAAAACTAAGgATCCAGGCCGAGGTTCAGGATACTTTCATGACATACGAAGTATATGACGATGTCATCACTTTGAGACTGGTGAACGAGGCCTGCAAGATGCTCAACGTGTCTTCTGAAGTGGTCCTGAAGCTCTTCGGGGAGTATTTCTTCAGCTTTTGCAAGGAGTCAGGGTATGACAGGATGCTGCGGACGCTGGGCGGAAATTTGATGGAGTTCATTGAGAACCTCGATGCTCTCCATAGCTACCTTGCACTTTCTTATCAGGAAATGAATGCCCCCTCTTTTCGAGTGGAGAGGAGGAAGGATGGGGAAATGCTGCTTCACTACTACTCTGACAGGAGAGGCCTCTGTCATATTGTGCCAGGGATAATAGAAGCTGTGGCCAAAGACTTTTTCAACAGTCAAGTGCACATGACCATCCTCAACCAATCTGAGGAGGAAGAGCGGACGGGGAAGAAGGAGCACGTGGTGTTTCTGGTCATTCAGAAATCAAACATAGTCAAAAAAAAAGCGCGTTCAGACGGGGGAGCCAACTACAACAAAAAGCGGGATAAGGAGGCGATGGAGGAAACCTTGAGGAAAATGAAGGCAACGTATGctgctctccctccctgccctggGAGAAGATCACACTGGGAGATTGTGAGGAGCATTGTCAGGTTTGGACAAGGCAACTTGTTAAATACATTCAGGCCATGTTACCCCGAAAAGTTGTGGATGGAGGAGACCACATTCTGCAATGTGTTCCCTTTCCACATTGTTTTCGACGGGGCACTGAAGGTGAAGCAGACCGGGGTCAACATTCAGAAGTTTGTTCCCGGCCTGCAGACCATGGACATCCAGGTGGATGAATACTTCAGCATCACGCACCCCCAGGTCACCTTCACCATCGACAGCATCAGAAAGTTCATCAACAGCCAGTTTGTCCTGAAGACTCGAAGAGAGATGATGCCAGAGGCCTCAAAGGATCTGCCTATGCTCAAACTCAGAGgGCAGATGGTGTGGATGGACACGCTGGGCTGCATGGTGTACCTCTGCTCCCCGAAGCTGCGCAGCCTTGGCGAGCTGGAGGAGCGGGGCATGCACATCGCCGACATCGCCCAGCACGACACCACGCGTGACCTCATCCTGCTCAACCAGCAGCGGCTGGCCGAGATCGAGCTCTCTAACCAGCTGGAGCGCAAGAAGGAGGAGCTGCGCATCCTGTCTAGGAACCTGGAGGTGGAGAAGAAGAAGactgagaccctgctgtacgCCATGCTTCCCAGACACGTGGCCAACAAGCTCAAGGAGGGGAAGAAAGTGGAAGCAGGGGAGTTCAAGGAGTGCACCATCCTCTTCAGTGACGTGGTGACTTTCACAAACATCTGTGCAGCGTGTGAGCCCATACACATTGTCAATATGTTGAATTCCATGTACTCTAAATTTGACCGGCTGACCAATGTCCACGATGTGTACAAGGTTGAAACTATAGGGGATGCCTACATGGTGGTTGGAGGTGTGCCAATCCCAGCGGACAATCATGCAGAGCGAGTGGCCAATTTTGCCCTGGGCATGAGAATTGCGAGCAGAGAGGTCACCAATCCTGTCACAGGGCATCCAATCCAGATCAGGGTGGGTCTTCACACTGGACCAGTACTAGCAGGGGTGGTGGGAGACAAGATGCCAAGATACTGCTTATTTGGAGACACTGTCAACACTGCATCCAGAATGGAGAGTCACGGAGTGCCCAACCACATCCATCTTAGCCCCACATCGTACAGAGCCCTTGAAAATAAAGGATTTGAGATCACTGAAAGGGGAGAAATCGAGGTGAAAGGCAAAGGGAGGATGATTACTTACTTTCTGATCCAGAATCTGCAGCTCTCTGAGGATGAGATCATGGACAGACATAGTAAAGAATCACCCCTGAAGACAGAGGGTGAGGAGGGGGCTGTAAGTAACAGAAAA

Function

GO: NA

KEGG:

id description
K12319 GUCY1B; guanylate cyclase soluble subunit beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87141 lncRNA downstream 2039 11879097 ~ 11880456 (-) True G69759
TU87123 lncRNA downstream 111102 11769690 ~ 11771393 (-) True G69743
TU86933 lncRNA downstream 745409 11132788 ~ 11137086 (-) False AMCG00014365
TU86856 lncRNA downstream 1061423 10815771 ~ 10821072 (-) True G69539
TU86853 lncRNA downstream 1086306 10795883 ~ 10796189 (-) True G69536
TU87239 lncRNA upstream 1078780 12970253 ~ 12970555 (-) True G69849
TU87308 lncRNA upstream 1193890 13085363 ~ 13086345 (-) True G69896
TU87309 lncRNA upstream 1193890 13085363 ~ 13086345 (-) False G69896
TU87311 lncRNA upstream 1193890 13085363 ~ 13086345 (-) False G69896
TU87328 lncRNA upstream 1196135 13087608 ~ 13096336 (-) False AMCG00014412
AMCG00014385 mRNA downstream 14966 11866611 ~ 11867529 (-) True AMCG00014385
AMCG00014379 mRNA downstream 127034 11750191 ~ 11755461 (-) True AMCG00014379
AMCG00014380 mRNA downstream 160042 11697189 ~ 11722453 (-) True AMCG00014380
AMCG00014374 mRNA downstream 214958 11660011 ~ 11667537 (-) True AMCG00014374
AMCG00014372 mRNA downstream 379894 11459613 ~ 11502601 (-) True AMCG00014372
AMCG00014384 mRNA upstream 2287 11893760 ~ 11895883 (-) True AMCG00014384
AMCG00014390 mRNA upstream 92600 11984073 ~ 12003809 (-) True AMCG00014390
AMCG00014391 mRNA upstream 305566 12197039 ~ 12199190 (-) True AMCG00014391
AMCG00014389 mRNA upstream 830269 12721742 ~ 12726644 (-) True AMCG00014389
AMCG00014395 mRNA upstream 838254 12729727 ~ 12739665 (-) True AMCG00014395
TU87063 other downstream 220002 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 1084348 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 2565328 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 3498271 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 3723905 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 16438266 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 17497817 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 20371694 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 20705989 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 20705989 32597462 ~ 32619149 (-) False G73127

Expression Profile