RNA id: AMCG00014389


Basic Information

Item Value
RNA id AMCG00014389
length 2686
RNA type mRNA
GC content 0.40
exon number 6
gene id AMCG00014389
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 12721742 ~ 12726644 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGTGGAAAGGGAGCTGCTTAGATGCAAAAGAGACAAACCAGGAGAagctttcaatatatatatttttaatggtatttGGTGATCGCATTAAGGATAACGATGTGGAATAGCAGACCACTTTCAATCTGAACATTTATTCTAGTATTCTGTAGTCGCTGGAGATAAAGTCATTAAAGCAGTGGCTGAAAAGGCGCACTTTTTGGAAGTACTAGTAGCCAAGTAAGCTTTAATCCTGCTATTTAGGTGGGAAACGGGGAAAGCCCTACTGTGCAGTGTTTAAATATAGATTGCACAGCACGTTTGATGGTGATGCACGATTAAAAAAAGCGATTTGCCAAACAAAAGTGGTGTGTATTATTGTGATTCATTTGATCAACAAATAGGGTGAACAGGAAGCATGGCAACGTCTTGTCAGGAACGACGAGTGCTGGTGGAAATCCCTGCTCCTCAGCCCAAAATTTcagCTCACATAAGGAGGTCCTACTTTGATGCCTTGAACTACAGGGTGGGCCCATCACCCTACCCCAGAAATAATATAACCAACCAAGAACAGGATGAGTTGGCAGTGGAGCCCTCCACGAAAAAGCAGCGACTGAACCAGAAGAAGGGTGTTGGCTTGGAGCTTCACCTCATGGCCCTTTCCCAACAACAGCTCGTAGACCTCGTCAGTTCCTTGATGTTCCTGGAAGAGGAGAAAAACACTAAAGTTCTCTGTCCTGACCTGAAACTCTTACAAGAGCATCTGCAGTGTAAAAAAGCCAACGTGTATCGATCCATCCCTTACTCGCGACTGGGGTCCAACCGAGATGCACACTGCTACAGGAAGGCCTATCCTCACCTTCTGGCTTTCAAGCAAGCTTGTGTGGAAGGAGGCAAGTTGCTGCTCAAGTGTAAGCAGTGGGACGCAGCCCTGGAGTTCGGGCTGAGCGCGTGGAGGTACACCAGCGAGTTGCCGCAGTGGGACACCAGCAGCCACAACATGCTGAGAGCGCAGTGCTTCAGCACATTGGCAACACACTGCATCACAGCTTTGCAACAGAGCTGCATTGGGATGGCCAAGTGCCTGGAGCTGAAAAGAAGGTTTAAAATTTCATGGACACAGTGCAAAGAGATCACACCATGTATTGAGGAACTGGAGAGAATGATTGACAATCTGCAGAGCAGCACGCCTGACTCCACTGggttttgatatatatatattttttttttttccaagatgtGTATATAAACCCGTGTTGTGCTAAAGGGAGACTTCAGTACCCATGCACAATGCacaattcctttaaaaatatatatactatttaaaAGAAGGGGAAATCATACAAGTTTTGACTTAAAGGCAATATCCCAATTTACTAAAGTTGTCGATGGTGTGAACCCCGGGGGAGGGGAGCGAGCACATAACATTACGCATATTTAAGCTAATTTTGGGCAGAAATTCCACTTCTGTTaatctttttatataaatatttctggagaaactattttttatttatttaatgttctctcagacttaaatgaaatgcatttcaggtACTATTTATTCAGTGGTCATTAAGGAGATGCATCTTTGGTACGAATTTCTATTTAATGAGTTGCATCAAAAATGTAGCCAGAAATTAATATTCTCAGCCTGTAGATTTAAATCTCTTGTGTGTCTGATTTTTCATATCGGTGTCTGCAAGCTAAGGGGCATTGATCAGTGTGGAGAAATAGGTGGCTGGTTAAATTATCCACTGATCTGGATTTGACCtcagcagtttaaaaaaaaaaaaaaggtttaaggctaatttaaaactaaattgcaTGGGTTATCTTGGTTTCCTCAAccaccttttttttcctctttctgtctGACTCTCTGGATTTATACTTGAGCCCTTTTCAATGTTCCCTTTGAAAGATTGCACATGGTTTCTGAGAAACTTGAATTTTATTTAAGGAATAACAATCCTGTTTTATGATGCCATTCAAAGTACCTTGGTTAGGTGCTGTGCTTGTGTTTGGATTCCTCTGAAAAATTAATTGGCCAACAGATCAGTTTTCCCATTACAGTGCATTTCATTGTAAGGACTTGAAACAACCCTACAGCTCATCATGCTGTCAACAAGGAACCAGACTAAGGCTGTTTGGCATCAAATTCACTTCATTTGAATAAGCCTATTGTAACATCCTCTGAATACCTAAAAGAACACTGATCTGGATGTGTGAAACCAGATGATAGTGCATTtgttatgtataaataaagatatttgCAGAACGGTAATTGTTGTTTCTCAGTGTCAAAAAAACAACCGTACGGTTATAATTAAGGGAGTACTAGCTATAAATCGCcctacattttgttaaatagcCTTCTATTTGTGTACTCTATTAGcattccattacatttttataaatatctgtGACAACAGGCCCAAGTTTTATGTGTCATatattcacaattaaaatgttgcattaagcacaatttgaaataaatggctTCTGAAAGCTCTTAAATCCTCACAAATCATTAGCCATTTAACTGTGCTAATGAGTTCCAGCTGTATGGTGGGAGAATAAAGATGAGCATTGACTAAGCAGAGTTGGGAGCTGATGTAAACATTAAGGGAGAGACTGAGCACTCGGGTATGCCCATTTATTATGGGCTTGTCTGATTGATCTGGTTGAGTGTTTAATTGAAT

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle
ko04114 Oocyte meiosis
ko04115 p53 signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87141 lncRNA downstream 841286 11879097 ~ 11880456 (-) True G69759
TU87123 lncRNA downstream 950349 11769690 ~ 11771393 (-) True G69743
TU86933 lncRNA downstream 1584656 11132788 ~ 11137086 (-) False AMCG00014365
TU86856 lncRNA downstream 1900670 10815771 ~ 10821072 (-) True G69539
TU86853 lncRNA downstream 1925553 10795883 ~ 10796189 (-) True G69536
TU87239 lncRNA upstream 243609 12970253 ~ 12970555 (-) True G69849
TU87308 lncRNA upstream 358719 13085363 ~ 13086345 (-) True G69896
TU87309 lncRNA upstream 358719 13085363 ~ 13086345 (-) False G69896
TU87311 lncRNA upstream 358719 13085363 ~ 13086345 (-) False G69896
TU87328 lncRNA upstream 360964 13087608 ~ 13096336 (-) False AMCG00014412
AMCG00014391 mRNA downstream 522552 12197039 ~ 12199190 (-) True AMCG00014391
AMCG00014390 mRNA downstream 717933 11984073 ~ 12003809 (-) True AMCG00014390
AMCG00014384 mRNA downstream 825859 11893760 ~ 11895883 (-) True AMCG00014384
AMCG00014386 mRNA downstream 830269 11882495 ~ 11891473 (-) True AMCG00014386
AMCG00014385 mRNA downstream 854213 11866611 ~ 11867529 (-) True AMCG00014385
AMCG00014395 mRNA upstream 3083 12729727 ~ 12739665 (-) True AMCG00014395
AMCG00014396 mRNA upstream 51839 12778483 ~ 12780838 (-) True AMCG00014396
AMCG00014397 mRNA upstream 123363 12850007 ~ 12875536 (-) True AMCG00014397
AMCG00014398 mRNA upstream 180760 12907404 ~ 12982495 (-) True AMCG00014398
AMCG00014412 mRNA upstream 361018 13087662 ~ 13133751 (-) True AMCG00014412
TU87063 other downstream 1059249 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 1923595 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 3404575 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 4337518 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 4563152 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 15603095 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 16662646 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 19536523 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 19870818 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 19870818 32597462 ~ 32619149 (-) False G73127

Expression Profile