RNA id: AMCG00014392


Basic Information

Item Value
RNA id AMCG00014392
length 2295
RNA type mRNA
GC content 0.42
exon number 9
gene id AMCG00014392
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 12842790 ~ 12849371 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACCCGGATGTACTATCTGCACTTCCTGGTCGAGTGTCGCTACGTAAGACGTCATTACCAATGAAAACAGTGCGGGGACGattcaaaaaatgttaaagcagtttaggtttgtgtgtgtgtttatttaatttaattttaattctgtttctaTGCAATGCACACATTTTACGTAATGTGAATCTACGCTGTCATTACACTGAGCGTTTTATACTAGAGCTGTGACAATGAGTGCGACGCAACTAAGCCAGAAAGCCATGGATACAAAACGTTCGGGAGGAAGCTCTAGAAAAAGAGCAGAGCGCAAAAGAAGACCCAAGGACAAGCCTGAAGATGTTTCATATGGCAAGAGCGCAACAAAGCCAAGTGTGCACAGGGACAGCCTGGCCCGGAGTGCAGCTTGCAGCCCCTTGAGGAAGGTGCTCAATGTGATCCCAACAGGGAAGCAGTTACCCAGGACACCTCCCCCGGGGACTCCAGCTCTGAACCCCGAAGGTGCTAAGAAACTACATAACATGAGGAGAAATGGAGGAAACCAGGACATGGAAGGTGTGCCTGCTCCTGAAAGAGACGCTGCTGGAGAAAGGCATGGGCACGATGAGAATTTGCCAGGTTCAGATGTCATGACTCAACAAGCGTCAGAGTGTTTGATTGAGGACCCCAACGACATCCTGAAAGAGCCTTCAGATGTGCAGGACTTGGAAGagcagagagagatgagggagaaggctatgaggaggaggaagagcaccCTGGCCGTCGCTGCGCACCATGGTGAAGTAGACCAGGAGGGCATGGTTAAAGGCATGCAGGGCTACGAGTGGACTGAGGCCGACTTGGAGTTTGTTGAGCGAATGAAGAACGAGAAGCTGCTTCAGCAGCTGAAGACAGAATTAAAAATCTTACAAAAACAGCTGAAAGACGAGCAGCAGAAGAAGGACCTGTCTTTAGCAATGAAGGAGAAGATCCAAGCAGACTTCTCAGACATGAGCACCTCTTTTGACCAAACCCTGAAACTTGGGAGGGCCTTCCTCTGTGCTAAACTGGGTACTAAGAAAGTGAAGTCTTTGCCCCCTGAAGAGGTGATCTCACAGATGAGTGTGGCCGATATCCAGCATGTCTGTCAGGAGGAAAAATCCAAACTTCAGATTTTACAGAAGGAAGTGGAGATTGGGCAGCGAAAAACAGCCAAGCAGGTTGCACAAGAAGAGCAACTCAGAGTCAAGAAAAAACTGTGTgaagaagaaatggaaaagcAGGAAAGAAGGACCCTGATGGCAAAGGAGAATGTGGACCATATGAAGGCAGAGCTGTCAGATCTGAAGTCTAAACTCTCTGAATCACAGGAGAAGTTAAAATCCATGAAAGGCCAGATAGAGACTCTCAAGGCATCCAAGCAGATGGAAGCCCTGTCTCTTGATGGCCAGAGCAAAGAAGATGTTGACATGACCAAAATTGTGAGGCGTTCAAAGCGAATACAACACAGGAAAGATCAATTCCTGGAAAGAGATGCAATTCTGAAGAGGATTCGTTTACCAGATTGATGCCATAGTAGGTAGTGCTGACTGCCAggtgttatttattgttattattctgttgtgtatttgttaactCTCCCCAATTCTAATTTGTCACTaatgtgtgaaataaagttttttttttttttctgttaacaTGCGGTTTAGATTGATTGTAATGATAAATGTGACTTTCCTTCTTTGGTGGAAATCTATGAACTGTGAAATCCATGAAACGGATTTTAAGAGCATGGTATTACTCGATGCTGACTAGATAGTTTTATTTCTAGTATCTCTTGTGCTTTATCTTTCAATATTAAGTATTCATGGAAATAATTGAAAACCTTCAAAGTGCACAAACCAAATTATATGGAGCCGGGTAAGAATAAAAAGGGTCACCCTTTTAAGGAccctgtgaaatatttaatgtgGTTTTCATATTAGGCTAGTGTGAATTCAGCCCCAACATAAAAGGAAAGGAAGTTTTAGTTCTGCTTATGGAACCTTTAATGTTACAACTTTGTAACCACTAGATGGCAATACTACCTAAAACAAGAGATCTTGATTACATTGTGAtcttttcttacattttgtatccttttagtttttgtttattcatcaCCTTGATGGGCTGTTTTGgtgattttacttgttttaaaagaCAAGCAAAACAACCACCCTAATGTCCTACTCATCAGCTGAGAAATATGACATTGTGACAAGATGtgcttttaaatcaatttattaaATCAATCCTTGGAGTAATTTCAAGTGTAGTAGC

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0006259 DNA metabolic process biological_process
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
ko04110 Cell cycle
ko04113 Meiosis - yeast
ko04114 Oocyte meiosis
ko04914 Progesterone-mediated oocyte maturation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87160 lncRNA upstream 242477 12600104 ~ 12600313 (+) True G69778
TU87118 lncRNA upstream 1058707 11783865 ~ 11784083 (+) True G69739
TU87100 lncRNA upstream 1120023 11719318 ~ 11722767 (+) True G69722
TU87041 lncRNA upstream 1201338 11641083 ~ 11641452 (+) True G69681
TU86944 lncRNA upstream 1621516 11221070 ~ 11221274 (+) True G69610
TU87223 lncRNA downstream 130888 12980259 ~ 12982434 (+) True G69833
TU87357 lncRNA downstream 396938 13246309 ~ 13251732 (+) True AMCG00014407
TU87358 lncRNA downstream 396938 13246309 ~ 13251732 (+) False AMCG00014407
TU87406 lncRNA downstream 484843 13334214 ~ 13335185 (+) True G69959
TU87408 lncRNA downstream 502962 13352333 ~ 13379593 (+) False G69961
AMCG00014393 mRNA upstream 1662 12834950 ~ 12841128 (+) True AMCG00014393
AMCG00014394 mRNA upstream 8471 12823553 ~ 12834319 (+) True AMCG00014394
AMCG00014388 mRNA upstream 897964 11943575 ~ 11944826 (+) True AMCG00014388
AMCG00014387 mRNA upstream 941369 11900522 ~ 11901421 (+) True AMCG00014387
AMCG00014383 mRNA upstream 965076 11870025 ~ 11877714 (+) True AMCG00014383
AMCG00014402 mRNA downstream 120887 12970258 ~ 12978095 (+) True AMCG00014402
AMCG00014404 mRNA downstream 128794 12978165 ~ 12978428 (+) True AMCG00014404
AMCG00014403 mRNA downstream 129100 12978471 ~ 12979109 (+) True AMCG00014403
AMCG00014399 mRNA downstream 160334 13009705 ~ 13015654 (+) True AMCG00014399
AMCG00014400 mRNA downstream 180515 13029886 ~ 13040944 (+) True AMCG00014400
TU86705 other upstream 2834142 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 5426196 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 5493323 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 8190826 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 1487487 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 2826260 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 2826260 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 3280154 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 3616310 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile