RNA id: AMCG00014393


Basic Information

Item Value
RNA id AMCG00014393
length 2159
RNA type mRNA
GC content 0.38
exon number 7
gene id AMCG00014393
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 12834950 ~ 12841128 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTGATTGCAGTTAATGAGTAACAGACCTCTGGTTTCAAAGGTTTGACAATGCTGGAGAGGCAGCAGGACACGCTAAGCAGACGTTGTGACCGGCTACTTCAGACGAGGTTTTAAAAAGGGGTGCAGTTTTTCTTCAGGTGTAGGGgaatatgttgaaaaacaagGTCAATGCGGGAGGCCCCTTTGCGAGGCGCCCTGACAACACGGCTTTCAAGCAGCAGAAGCTTCCTGCCTGGTCCCCCTCCCTCACTGCCCAGACGGTCCTGCCGTTCTTCTACCTGATCGGTCTGCTGTGTGTTCTCATGGGCATCTGGCTTTACCTCACTGTCACTGCAACCCAAGAGATGAAGATTGACTACACAGATATAGATAACTGCTCTGCCTGCTATGAGCTGCGCAAAGATAGCCATAACTCAACCAAGGAATGTCAGTGCACTGTCCATTTTACTCTCACCGAAGGATTCAAAgGGGATGTATTTATCTACTACGGGCTAATAAACTTCCACCAGAACCTGCGGAGATACATGGACTCTAGGAGTGATGCACAGCTTGTGGGTAGGAAAAGTCAACTTAAAACGACACAAGATACTTGTGCACCCTTTGACAAAACCAGTGATAACATTCCTATTGCACCCTGTGGGGCTATTGCCAACAGCATCTTCAATGATTCCTTTGAGGTTTTCTTTCACCCAGCTGGGGGTATGGAAATGGCTGTGTCTGTCTCAAAGACGGATCTTACGTGGTACACTGACAAAAATGTGAAGTTTAAGAACCCAGGGCCAACCAATGAAACTCTGTCGGAAATCTTTTCAGGAACGGCTCAGCCAATTTACTGGCGGAAACCTGTTTATATGCTGGATCCATATGAAAGAAGTAACAATGGTTTTGTGAATGAAGATTTCATTGTTTGGATGAGAGAGGCAGCATTTCCAAATTTCAAGAAACTCTATGGTAGATTGAATCACACCCCAGAGTTTAGTAATGGACTCCCACCTGGGAACTACAGCATCCAGATTTCATACAATTTTCCTGTGCAATATTTTCAAGGGAAAAAGCTGGTGATCCTTTCAACAGTGTCCTGGTTTGGGGGCCATAACATGTTCCTGCCAATTGCCTACATTGTGTCTGGAGGTATTATCATCATTGCTGCCATGATCTTAactggcttttattttaaagtgggaAAACATAATTTGGATTTGGAAGATTAAACCTGAGTTGCGTTTTATGAACTGCTTGAGCCAACACTATGCATTTGTGTCTAatgatataatacatataaactaTCTTAATTTCACATAAGCCCATcaaagagatttgtttttcaggaagTGCATTTATGCAAAGGAATGATAACCCACaccaaaatatacattgtttcGCCCATTGTCATATAGTGACTTTACTAtccaaaaatgtttgtgttgctgttgttgttttaatttatatttgtattgcaaagTATCCTCTGATGAATGACAAATAACCACTATTCCCTTAATTAGAACTTCTAGCTtctaatattttgtaaacatttgtataaaagCTGTGATTCTCTAtgatcttaatttaatttcactttatgttttaaatgtttatgattTTGGTGTGATTTCTGTGATTTTACATTATGAGATTAATAGTGTTCTACTTttgatagattttattttattctgaaaatgtaatgtgatactatatttttactttaacttGATATAGAGAAATAACAACGAAATAAAGATTGTTTTGTACACTTTGGGAAGTGTTTTGTGAGTATATTAACATACCCACGTTGGCTTTTATATTTTTGGAGAACAATACACTATTACGTTATGTAAATTATGCAGCTGTCAGTGTGTGAGCATTACAGTTGGAAGGAATACATACTCAACGGCTGTAACTTGAGCTTAATTAAATCCTAATAAGGAACAGGAGTTGTTAATGTCAATGTTTACGGTTTCATATTCACATGTATCAAATTTATTGGTCTATTGCATGATATCAGAAAAgaccatttctttatttatattgtattgtctGTTTCCTATTCTTTCACATtgtattagaaaaataactttGTGGTTCATAAATGTTTTACTAATGTGTTatgcaccgatcagccataacattatgaccacctgcctaatattgtgtaggt

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87160 lncRNA upstream 234637 12600104 ~ 12600313 (+) True G69778
TU87118 lncRNA upstream 1050867 11783865 ~ 11784083 (+) True G69739
TU87100 lncRNA upstream 1112183 11719318 ~ 11722767 (+) True G69722
TU87041 lncRNA upstream 1193498 11641083 ~ 11641452 (+) True G69681
TU86944 lncRNA upstream 1613676 11221070 ~ 11221274 (+) True G69610
TU87223 lncRNA downstream 139131 12980259 ~ 12982434 (+) True G69833
TU87357 lncRNA downstream 405181 13246309 ~ 13251732 (+) True AMCG00014407
TU87358 lncRNA downstream 405181 13246309 ~ 13251732 (+) False AMCG00014407
TU87406 lncRNA downstream 493086 13334214 ~ 13335185 (+) True G69959
TU87408 lncRNA downstream 511205 13352333 ~ 13379593 (+) False G69961
AMCG00014394 mRNA upstream 631 12823553 ~ 12834319 (+) True AMCG00014394
AMCG00014388 mRNA upstream 890124 11943575 ~ 11944826 (+) True AMCG00014388
AMCG00014387 mRNA upstream 933529 11900522 ~ 11901421 (+) True AMCG00014387
AMCG00014383 mRNA upstream 957236 11870025 ~ 11877714 (+) True AMCG00014383
AMCG00014375 mRNA upstream 1067360 11766428 ~ 11767590 (+) True AMCG00014375
AMCG00014392 mRNA downstream 1662 12842790 ~ 12849371 (+) True AMCG00014392
AMCG00014402 mRNA downstream 129130 12970258 ~ 12978095 (+) True AMCG00014402
AMCG00014404 mRNA downstream 137037 12978165 ~ 12978428 (+) True AMCG00014404
AMCG00014403 mRNA downstream 137343 12978471 ~ 12979109 (+) True AMCG00014403
AMCG00014399 mRNA downstream 168577 13009705 ~ 13015654 (+) True AMCG00014399
TU86705 other upstream 2826302 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 5418356 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 5485483 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 8182986 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 1495730 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 2834503 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 2834503 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 3288397 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 3624553 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile