RNA id: AMCG00014399


Basic Information

Item Value
RNA id AMCG00014399
length 1465
RNA type mRNA
GC content 0.44
exon number 3
gene id AMCG00014399
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13009705 ~ 13015654 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTATGGATCCTAAACAGGAAATGTCGTCATTATGCTCTGGCCAACCCTCGACTGACAGCTGTGTTTCCGATTTGTTCATGCGCGGAGAGACATTTTGAAGCGAAAAGATAAAGGGCATCCCCTCTGTGTTGCGGGTGTAGTttgggaacaaaataaatacaaataataataataatcctgacTTTCGACGCTGTTTTCTAGAAACacctacaaaaatacagtTTTCCTTGTGATCAGCTCTGCACCATGGCTTCACGAGCAGGCCCTCGAGCGGCAGGCACTGATGGAAGTGACTTCCAGCACCGAGAGAGAGTGGCATCGCACTATCAAATGAGTGTGGCCCTGAAGTCTGAGATTCGAAAACTGAACATTGTTCATGTGCTGATTTGGCTCCTTGTGGCAGCGCAGGTCACCGTCAGCTACCTGAACCTGGTGTCTCACGATGTGGTGGCCACCCCCTATCAGTGGGAATACCCCTATTTGCTGAGCATCTTTCCCTCCATCTTCAGCTTTATGTCTCTTCCACGTAACAACATCAGCTACCTGGTCATCTCCATGATCAGCGCCGGGCTGTTCTGTATCGCGCCTCTCATCTACGGGGGAATGGAGATGTTCCCTGTGGCCCAGCAGCTTTACCGACATGGCAAGGCCTACCGCTTTATCTTTGGCTTCTCGGCTGTGTCGGTCATGTACCTGGTGATGGTCATCTCCGTGCAGGTACATGCCTGGCAGATCTACTACAGCAAGAAGCTTCTAGATGCCTGGTTCACCTCCACCcaggacaagaagaagaaatgaGAGGATCTGCAAGTGGAATGGAAGGAGAAtgaacactttctttttttaatttattttttcttaagaaaGAACAACTGCTGCCACAGTAAGGAGTACCATGCAGCTTTTacttcatttgcaccaaaaatCCTTCTCAGCAACTTCTCATCTCCTCCAAGGCCAGAATAAGATGATGTCTATGGGGGGAAAGATGTATGAACCAAGGGGCAACAGTGGGGAACATCaaagcaaagtttttttttgttttaaatatgaccATATACACTCTCTTAAAGAGCTCACTTACTAGGCAGGCAGAATCTGCATTTTAATACTGCACGTCATCTTACTAACAAAGCAGAGCAATGGGGACCCTGTTGACTGGGGTGTGTGAACAGCACACTGTGAGGAGGTTAATTTCCGTGCACCAAAACTGAAGAAGAGTGGCCATGTCTGGCAGTTATGCAAATACACATTCTCTTCTTGAAACTGTATTTCCAGGttatcataaatatattttgttttcagttgcaTCTCATTATATTGTTGTCTAATgactctgaaaataaaataaggcagTCATAATTGGATTTCCcgtgttttctgtttgaatttgcaattaaaaagttgtctttgtgtttgtttttttaaacggTGTGTAATTGGAGTGAACCACAGAATTGTTC

Function

GO:

id name namespace
GO:0007029 endoplasmic reticulum organization biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87223 lncRNA upstream 27271 12980259 ~ 12982434 (+) True G69833
TU87160 lncRNA upstream 409392 12600104 ~ 12600313 (+) True G69778
TU87118 lncRNA upstream 1225622 11783865 ~ 11784083 (+) True G69739
TU87100 lncRNA upstream 1286938 11719318 ~ 11722767 (+) True G69722
TU87041 lncRNA upstream 1368253 11641083 ~ 11641452 (+) True G69681
TU87357 lncRNA downstream 230655 13246309 ~ 13251732 (+) True AMCG00014407
TU87358 lncRNA downstream 230655 13246309 ~ 13251732 (+) False AMCG00014407
TU87406 lncRNA downstream 318560 13334214 ~ 13335185 (+) True G69959
TU87408 lncRNA downstream 336679 13352333 ~ 13379593 (+) False G69961
TU87409 lncRNA downstream 361880 13377534 ~ 13380404 (+) True G69961
AMCG00014403 mRNA upstream 30596 12978471 ~ 12979109 (+) True AMCG00014403
AMCG00014404 mRNA upstream 31277 12978165 ~ 12978428 (+) True AMCG00014404
AMCG00014402 mRNA upstream 31610 12970258 ~ 12978095 (+) True AMCG00014402
AMCG00014392 mRNA upstream 160334 12842790 ~ 12849371 (+) True AMCG00014392
AMCG00014393 mRNA upstream 168577 12834950 ~ 12841128 (+) True AMCG00014393
AMCG00014400 mRNA downstream 14232 13029886 ~ 13040944 (+) True AMCG00014400
AMCG00014401 mRNA downstream 42211 13057865 ~ 13065977 (+) True AMCG00014401
AMCG00014406 mRNA downstream 223419 13239073 ~ 13240110 (+) True AMCG00014406
AMCG00014405 mRNA downstream 225186 13240840 ~ 13245634 (+) True AMCG00014405
AMCG00014407 mRNA downstream 230696 13246350 ~ 13250280 (+) False AMCG00014407
TU86705 other upstream 3001057 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 5593111 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 5660238 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 8357741 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 1321204 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 2659977 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 2659977 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 3113871 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 3450027 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00041665 True 1615 mRNA 0.36 3 NC_007133.7 28641841 ~ 28645676 (-)