RNA id: AMCG00014405


Basic Information

Item Value
RNA id AMCG00014405
length 2078
RNA type mRNA
GC content 0.44
exon number 3
gene id AMCG00014405
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13240840 ~ 13245634 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATACGAGTGgtcCATTTCAAACATAGATGTCCACAGACATCTACCATTGCTGGTAGGCAGGGAGGCTGGTTTCTGAGATGGGGCCATCCTTCGCAATCCTGCCGAATGCTCTCCACAGCCTGGGCACTGAGGAAAGAGGTAGTCCAGCCCAGTAGTAGTGCTGCAGACAAACTGGACCTGGATGCCTGGAAATCAGTGATGAAGTCAGGCAGTGAATATGAAGATGCTCTAAAAGAATCAGAGGAAGATGGCGAGGTTTCCCCTCTGCAGGCCACAAGAGAGTTGGTGCAGATGTGGCGGCAGGCGGGAAAGCTGGTGCCAGAGGAGATAACCGAAGAAGAGCTCCAGACTCTTATGGAACTGTCCACCAAGTCCTCCAAAAAGAGGTACCTGAAATATCTGGCTATTAAGGAAGGTCACAAGAAATCCAAGAAGGCTAagcaggagaagaagaaaaatgagaAGGCCCTTGAGGCTGCCAGTGGGAGCGcaggggaggaggaagaggaagagcagAGCAGAGGACACTTCAAGAACACGTTCATGCTCCAGTTCTGGCAGCGCTCCATGGATATGGGGTATAATTGGAGGGCTGCCCAAGCTATGCAGTTTGGGCAACCACTTGTTTTTGACATGAGCTATGATCAAAATATGCAACGGCGGGAGATTGAGAACACTGTCTCCCAGCTCCTGGAGTCTGAGGGCTGGAACCGCAGGTCTGTAGACCCCTTTCATCTCTACTTCTGTAACTTGAAGCCAGAAGGAGCCTACCACAGGGAGCTAGTGAAGCGTTATGGCACAGCCTGGGACAAAATATTGGTGTCCACCACGGAGATGCAGCATGTGCAAGTGTTCCCCAGGGACAGGCTAGTGTATCTGACTGCAGACTCCCCAAATGTGTTACGAGCCTTTGATCATAACAAAGTGTACATTGTGGGCTCTATAGTCGACAGGTCTATCCAGACTGGCTTGTCACTGGCCAACGCCAAACGCCTCCAGCTGGCTACTGCCCGACTGCCCTTAGATGAGTACCTTCAATGGGAGATGGGTGCCAAAAACCTAACACTGGACCAAATGATACGCATTTTAATGACACTCAAAGACAGTGGAAAATGGGAGGAAGCTCTGCAGTTTGTTCCCAAGAGAAAACATGATGGATTTTATGAGCAACAGCCACAGCAGAAACCGCAAAGGGGGAATTATGCAGGTGCTCCTCAGAAAGGCAGGACATATACTCGTCAGGAGGACCCCAAACCTAGAGTACAAGTCAATTTGAAAAATCGCAAGTTTGGTGGAACCAATTCCAGTCGAAAGGAAAAGGAGAATTGGTGGGAAATTAGTTAGGCTTATTCACGCAGACAACAGAATTTAGTTCAGTACTGAGTTACATAATGCAGTTAcagtctggtagaaggaaatcAGTAGAATGTTCAGAATTTTTCAGCATGTGTATAATGTGAatatttaggaaaataaatccttcaGCTCATAGTTTCTTAAATCTAAAAGTTATTTCTGGAGGATTCAGGGGAATGGTTCTTAACTTTCATGCAAATGGAAAAAGAGGAATAGAGAATATTATCTGctatgtcattattatttggCTGCATAGCACATTGTGTGTCTTGAATGTTTTACATGTAACTGTTCCAATTAAAAATGGCTTCTGGAAAGCAATGTAAATGGGAAGAATATTAACGTTCTAATTGACATTAGACTGATAAAGCACATTCATACAAATGATGATCAGTATTACTCTGTTCAGTGCTTCTGGTTTTTGCTATTGCCTTTGGGCATGCATTAAATGGCACACACCCTTTGTGAATATGAAATAGCCACGAGTGTGCATTTACACTTATAAGAAATCATGAGGATTGGTGATGGGTGATGGGTATTATTGATCAGCAATTAAATGCCACCTCTACAACACATTGCTATAAACAacataaactaaatacaaacaaagccacacatttgtaaatgtttatctTAAAACCACATAACTAATGAGAAGAaccaaatatcaaatatatgtGACTTGAAGGCAGAGCTAAAGCAGTTTTTCCATGGTCTGG

Function

GO: NA

KEGG:

id description
K17654 TRMT10C, MRPP1; mitochondrial ribonuclease P protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87223 lncRNA upstream 258406 12980259 ~ 12982434 (+) True G69833
TU87160 lncRNA upstream 640527 12600104 ~ 12600313 (+) True G69778
TU87118 lncRNA upstream 1456757 11783865 ~ 11784083 (+) True G69739
TU87100 lncRNA upstream 1518073 11719318 ~ 11722767 (+) True G69722
TU87041 lncRNA upstream 1599388 11641083 ~ 11641452 (+) True G69681
TU87357 lncRNA downstream 675 13246309 ~ 13251732 (+) True AMCG00014407
TU87358 lncRNA downstream 675 13246309 ~ 13251732 (+) False AMCG00014407
TU87406 lncRNA downstream 88580 13334214 ~ 13335185 (+) True G69959
TU87408 lncRNA downstream 106699 13352333 ~ 13379593 (+) False G69961
TU87409 lncRNA downstream 131900 13377534 ~ 13380404 (+) True G69961
AMCG00014406 mRNA upstream 730 13239073 ~ 13240110 (+) True AMCG00014406
AMCG00014401 mRNA upstream 174863 13057865 ~ 13065977 (+) True AMCG00014401
AMCG00014400 mRNA upstream 199896 13029886 ~ 13040944 (+) True AMCG00014400
AMCG00014399 mRNA upstream 225186 13009705 ~ 13015654 (+) True AMCG00014399
AMCG00014403 mRNA upstream 261731 12978471 ~ 12979109 (+) True AMCG00014403
AMCG00014407 mRNA downstream 716 13246350 ~ 13250280 (+) False AMCG00014407
AMCG00014414 mRNA downstream 20383 13266017 ~ 13274303 (+) True AMCG00014414
AMCG00014417 mRNA downstream 30939 13276573 ~ 13284294 (+) True AMCG00014417
AMCG00014416 mRNA downstream 45695 13291329 ~ 13301873 (+) True AMCG00014416
AMCG00014415 mRNA downstream 77733 13323367 ~ 13331090 (+) True AMCG00014415
TU86705 other upstream 3232192 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 5824246 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 5891373 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 8588876 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 1091224 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 2429997 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 2429997 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 2883891 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 3220047 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile