RNA id: AMCG00014407


Basic Information

Item Value
RNA id AMCG00014407
length 501
RNA type mRNA
GC content 0.50
exon number 5
gene id AMCG00014407
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13246309 ~ 13251732 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGACGAGAAACGAACAGACGACAAGCTCTTGGGTGACGGAGGACCAGAAGAGAAGGGAGGCAAAGGTGTGAAAACTAAGACTGTCTCTTCCAGCAATGGAGGAGGGAGCGCAGGCCGAAGCGCTGACAAGCGGTCAGCAGAAGACACAGCTGGAGACTCCAGGGCACAGCCCGCGCCGCCTAAAATCTCCAAAATGGGATTAATTGCCCCACCCATCAAGAAGCCGGCCCCCATCTCAATCAAGCTGGGTGCTAGTAAACCAAAGGAGAGTACCCCAGTCCTCCCTGTGAAGAAACCTGCCATAGCAGCTGTGTTTAATGAGGATGACGATAGTGAGCCTGAAGAAATGCCACCAGAAGCAAAAAtgagaatgaaaaacattgGCAGGGATACTCCTACATCAGCAGGACCCAATTCatttaacaaaggaaaacatGGGTTTTCTGACCACCAGAAACTCTGGGAAAGAAAGCTCAAAACCCAgttggataaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87223 lncRNA upstream 263916 12980259 ~ 12982434 (+) True G69833
TU87160 lncRNA upstream 646037 12600104 ~ 12600313 (+) True G69778
TU87118 lncRNA upstream 1462267 11783865 ~ 11784083 (+) True G69739
TU87100 lncRNA upstream 1523583 11719318 ~ 11722767 (+) True G69722
TU87041 lncRNA upstream 1604898 11641083 ~ 11641452 (+) True G69681
TU87406 lncRNA downstream 83934 13334214 ~ 13335185 (+) True G69959
TU87408 lncRNA downstream 102053 13352333 ~ 13379593 (+) False G69961
TU87409 lncRNA downstream 127254 13377534 ~ 13380404 (+) True G69961
TU87516 lncRNA downstream 432763 13683043 ~ 13684492 (+) False AMCG00014423
TU87518 lncRNA downstream 444535 13694815 ~ 13696871 (+) True G70054
AMCG00014405 mRNA upstream 716 13240840 ~ 13245634 (+) True AMCG00014405
AMCG00014406 mRNA upstream 6240 13239073 ~ 13240110 (+) True AMCG00014406
AMCG00014401 mRNA upstream 180373 13057865 ~ 13065977 (+) True AMCG00014401
AMCG00014400 mRNA upstream 205406 13029886 ~ 13040944 (+) True AMCG00014400
AMCG00014399 mRNA upstream 230696 13009705 ~ 13015654 (+) True AMCG00014399
AMCG00014414 mRNA downstream 15737 13266017 ~ 13274303 (+) True AMCG00014414
AMCG00014417 mRNA downstream 26293 13276573 ~ 13284294 (+) True AMCG00014417
AMCG00014416 mRNA downstream 41049 13291329 ~ 13301873 (+) True AMCG00014416
AMCG00014415 mRNA downstream 73087 13323367 ~ 13331090 (+) True AMCG00014415
AMCG00014419 mRNA downstream 89907 13340187 ~ 13360020 (+) True AMCG00014419
TU86705 other upstream 3237702 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 5829756 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 5896883 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 8594386 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 1086578 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 2425351 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 2425351 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 2879245 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 3215401 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00076228 True 477 mRNA 0.49 5 NW_018394383.1 1443 ~ 2298 (+)