RNA id: TU87358


Basic Information

Item Value
RNA id TU87358
length 3291
lncRNA type sense_over
GC content 0.36
exon number 5
gene id AMCG00014407
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13246309 ~ 13251732 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAACTGGTGACGTTGGCCCGTTGTGTTTTCGTCAGTGAAAATGGCGGACGAGAAACGAACAGACGACAAGCTCTTGGGTGACGGAGATTCCCCAACTGCCTTTGGTATTGGATGCAGTAAAACATAGCCTGCCTTGGTTTCTAGTTAAAATGATAATCCCATAATGCCACTTAATGTGAATGTTATTAGCAGCTGCGGCTGTGACAAAGTTATTAATTCAAGACATTGGATTTCTCAGCTACCCACAAATGATGTATCTTTGAACACTTGTCAGTGCGATACAGCTTATAACTATAGTTTAAGGTTTATGTAAAGCAGTGCTGTCTAATGCCATTCACACATTCCTCCATTTTCCTTCAGTTGGCTCACAGCCTTAGGCACATTTCAAGTCATATTTGATATGTTTACTCTTCATCACCGATGAAGAACATCttcaggaaaaataaagttgtaCTACATTTTCCAGAAACcttaatacaaatgtgttagTACACCATCTGCTGTGCATTTAAGCAGTAGATGTTTTATTGGACAGTTCAACCAAATGCATCTAACCTGATCGGTGCTTTATATAAGTTCTTTGATCACATTTATTGCTTCTAAGTGTATAATGTGATATGTAACTAAAGCTGATGGCAGAAGACCTATTGATCTCCTACAGGTGGATGATTTACATTAAAGATGATTCACCTGCTGCACCATGTGCTACAAATGTGGCATTAATCTAGCCTTATTCCCCTTCTGCTTATGAGCCACCAAACCATCACGCCACATCTGAAGCAGTCAAAATAACTctgttcatattatttatttcttagcagaggcccttatccagggtgacttacaaaaatataagcacaatacaaagtgcaaaaatacagtgcacttcaaggcataaaacatgaTGTGGTCTGTAGTGTTATACATTGCACGAGTGGAAGGGTAAAGTAAcccactttgtttgttttaaatcctttttaTAGCAATAACTCAGTTTAATCTATAATTACTGAAAACATTCAgaatagattttaaaacaaagcaaaacatgtaGGGTAAACTACTCCAAgctttacaattattattttgacttcCTTTGGACCTGTATGGTTTTGTAATGACCTACATGTGTTTTAAGGATTATTCCttccatttacttttaaatataaaaaatgttgagAGCCTATGTGCTGTGGACAATGTTCTTAGCTGCTGCTGTATTATCTACTGTATCTAACAAACAGCGGACAAGCCAGCTGAGTCAGTAAGGGCAAAGGCTGCAGAGAGACCCTCCCTAAAACGGGTTCTTTATGAAGTTGCTGCTACGGCTCCCCTGCTCGATTTAAAGTAGCTCACCTTGGTAAGTTGTTTCGACTCCACCAGGACCAGAAGAGAAGGGAGGCAAAGGTGTGAAAACTAAGACTGTCTCTTCCAGCAATGGAGGAGGGAGCGCAGGCCGAAGCGCTGACAAGCGGTCAGCAGAAGACACAGCTGGAGACTCCAGGGCACAGCCCGCGCCGCCTAAAATCTCCAAAATGGGATTAATTGCCCCACCCATCAAGAAGCCGGCCCCCATCTCAATCAAGCTGGGTGCTAGTAAACCAAAGGAGAGTACCCCAGTCCTCCCTGTGAAGAAACCTGCCATAGCAGCTGTGTTTAATGAGGATGACGATAGTGAGCCTGAAGAAATGCCACCAGAAGCAAAAAtgagaatgaaaaacattgGCAGGGATACTCCTACATCAGCAGGACCCAATTCatttaacaaaggaaaacatGGGTTTTCTGACCACCAGAAACTCTGGGAAAGAAAGCTCAAAACCCAgttggataaataaataatgttgtgaaaatgtgttttgggaCTTTGGCATATTTTTTAGATTAGAATATTTTAAGTAGCTCATTTCAATTGTTTGtcaattcatatattaaaactCTAAGGGTGgcttaaatataaacatgtaaatatggAAAATTAATATTCTTTAGGGGCatactttctttttattatacatttttttacatttaattttggtgAAACAGTTATGCATTAAGAGAAATAGATTATCTCcacatttcagaattaaaacaatgctTACCTTCCATTGTTAATGGTACAATTTTGTTTTGGCTGGTTTATTTCATAATTCTTATCATAGGTATTTATTGCTCTGTTACACAACTTGTTTACCATTTTCAGAAACTTTCTTTATTAACAAAATCACAGCTGTACTTTGCAGAATtgtgtattataaaatgtaacGGGCTGATAAATGTTACTCAAATGCAAAAACGCCAACTAATGAAAATATACCATGAAGGTATCAAGCTAAACCAGGCAATTAAAGTTGGCTGCTATTTACAATTAGTATTAGTTcttaaaattgcttttatttttctactatACATGGTTAgcaattatttttggtttataatTTAAGGGTATTTTGAGTATTTTGTccagttcatttttttattttatttttaaacaaaaataatgaagtactataatgtgtttttgaaacTTCATGATGGCTGTACAGAACTTCATTTGTTCCTCttaaagaacattaaaatacatttttcaacccCCCTGATTCCATGGATAGAtcacatttcctgttttgtttctgtattctgAAATTACCCATTCATAAATAGTTTACACTTGGTTACACTCAGTTCTAGTAGTGTGAGTCAGTGTTTGAATTATTCTTCGCAAAAGcatataattatttgtgtgaCCGATGTAAAGTATAAGTGTATGCCAGCCTTTGGGTTTACTGGTGTGTGTTAATGCTGTATGAATATATCCCTTGGTTTGaaattgtgtttgtaataatCCTTAATGTAAGAGTGTCACTGAATAGTCGTCAATTTGCATAAGATAGGTAACAGCTGTTTGTAGATACAAAGTGGGAATccacattttttgtaatatatctGTTGCTGCCTGTTTGCTTGAGTACAAGAGTGTACAGTAATAAGCTGACCCTTTAAATTACcctttttgtgtgattttgtacTCTTGAGACCTTGTCTcagtttattgtaaaatgtcacTTACTTGAttgtttaaacaatatatatggcTTCATGTGATGTGTGGGTGTTGATTTGGACAGAAATCATTACTGAGAAACTATTTAAAAGCAGAATAGAGGCTTAATATGCAAATTCTGTATTTAAGGAATGCATGAGTGCTGtatataaaactgtgaagtgtgGTTCTTCATAAAGCtgacatgtaaagtgttggttaAATAAACTTTTGCATAAAGAATGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87223 lncRNA upstream 263875 12980259 ~ 12982434 (+) True G69833
TU87160 lncRNA upstream 645996 12600104 ~ 12600313 (+) True G69778
TU87118 lncRNA upstream 1462226 11783865 ~ 11784083 (+) True G69739
TU87100 lncRNA upstream 1523542 11719318 ~ 11722767 (+) True G69722
TU87041 lncRNA upstream 1604857 11641083 ~ 11641452 (+) True G69681
TU87406 lncRNA downstream 82482 13334214 ~ 13335185 (+) True G69959
TU87408 lncRNA downstream 100601 13352333 ~ 13379593 (+) False G69961
TU87409 lncRNA downstream 125802 13377534 ~ 13380404 (+) True G69961
TU87516 lncRNA downstream 431311 13683043 ~ 13684492 (+) False AMCG00014423
TU87518 lncRNA downstream 443083 13694815 ~ 13696871 (+) True G70054
AMCG00014405 mRNA upstream 675 13240840 ~ 13245634 (+) True AMCG00014405
AMCG00014406 mRNA upstream 6199 13239073 ~ 13240110 (+) True AMCG00014406
AMCG00014401 mRNA upstream 180332 13057865 ~ 13065977 (+) True AMCG00014401
AMCG00014400 mRNA upstream 205365 13029886 ~ 13040944 (+) True AMCG00014400
AMCG00014399 mRNA upstream 230655 13009705 ~ 13015654 (+) True AMCG00014399
AMCG00014414 mRNA downstream 14285 13266017 ~ 13274303 (+) True AMCG00014414
AMCG00014417 mRNA downstream 24841 13276573 ~ 13284294 (+) True AMCG00014417
AMCG00014416 mRNA downstream 39597 13291329 ~ 13301873 (+) True AMCG00014416
AMCG00014415 mRNA downstream 71635 13323367 ~ 13331090 (+) True AMCG00014415
AMCG00014419 mRNA downstream 88455 13340187 ~ 13360020 (+) True AMCG00014419
TU86705 other upstream 3237661 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 5829715 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 5896842 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 8594345 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 1085126 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 2423899 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 2423899 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 2877793 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 3213949 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000170 False 1142 mRNA 0.40 5 NC_007112.7 7556977 ~ 7561221 (+)
grasscarp (Ctenopharyngodon idella) TU466041 True 1850 TUCP 0.39 4 CI01000299 4131258 ~ 4133941 (+)
rainbow trout (Oncorhynchus mykiss) TU1733122 True 1109 lncRNA 0.49 5 NC_048582.1 7754688 ~ 7757728 (-)