RNA id: AMCG00014408


Basic Information

Item Value
RNA id AMCG00014408
length 5333
RNA type mRNA
GC content 0.46
exon number 22
gene id AMCG00014408
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13208745 ~ 13237528 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCTTACTGACTCAGAAATTGGAAGCACTAACgtcatttaatttgcttatttgtttgttattctctttttacatctatgttgaaaatacattttaagctgtttttattgtatcaagtagtttaatttttatttattttttcatagaGAATTGCTAACTGAATTTGGGCCCTGACCAACTATTTGGATAGCTGTTTGAACACCCCCTGATGAGTTGTTCCAATTCTGACTCATGAGACATAAGTGCAGTTCAGATGGATCAAAGAAATGCCCTTACTATTTCAACCATGCAGGAAAAATTGGAGAGCTCCAAGGTGACAGGTCCATTCAAAATCCCCAAGAGAAAATCCTCCTCTGACTGTATGCTGATGCAGTCTCCTCTGTCTCGCCTCTCTACCAGTCCCAAAAAGATACACTGGACTCAGCTTTCTAATACTGCCAAAAGAGCACAAGCTTTCCCGCCTGTAAACCGAAACAGATCTCAAAACAGCAGCCAGACGTcaggaggcagagagacaggaagCTTCAAGGATGCCAGACTTGTATTGACGGACGTCTTGACGACTGATTTAGGACGTGGTTATTTAAACAGAGGGGCTCACATTAAGCAGTCCGGCTCAGCGATGAACCCCTCAGCCTCACGTGATGTCTCAGAGCTGAGCCCCTTGCCTCTCGCCCCTCCTTGGCAGTCCTGTTTTTCTAAAAGTGTGCGGCCACGACGAGCATCCGACTCTTTGGTGCAGCAGCAGAATGAGAACGTGGCGCGGAGTCGTCTTTCCCTTACCCTGTCCCTGAGGAGATCCGATACAGAATCAAAAGCATCCCCACCAGTCAGCAGGAGAAGGATTATGAAACCTGGGGagagtaataataaacaaagaatGGAAAGTGAGACCAAGAGGTCTCCTGGGCCACAGCAGGTGAAACGGTCTCCGTCTCGGGGCCCTAAGAGGAGTAGGTCAGATAGCAGCCCAGATACTGACAGGCCAGACAGGACACCAGAGGAACCTCAGAAGGACAGGCGAAGAAGTGGTACATCTACATCTCAAAGCAATGGACAGGTACAGAACATAGCTGAGAGCTGCCGGACCTCACGCAGGGAGTTTGTTTCAAGACCACAGGGTCAGGACTCTGGTATTGCTAGAAAACGGCTTGCTTTGGGAGAGCCGGAGCAAATCCCGTCTCCCAGAGGGACACCGGAGCAGAACACTGAGATCTTGCGGGAGAGAGACCTCCACTCTCAGGAGACGTCCCCTTGCGGTGACCACTGTGAGCAGAGCAATGGTGAGAAGAGCAGCCTGGGAATATGGCCCTCTGACTTGAAGAACCCACAGTCTTCCAGTGAGCCAATTGTTCTCTCCAGTGATGAAGAGGAGGGGAGCCATTCCCCCTCTCAGTCCACCTCTCTGACCCCAGATGTTAAGCGGCTGTTGATACGCATCATCAGACCTCCGAGagagccagagccagagccagagccagagccagcGGATATCCACAAGCAGTGCGGGGAGACGCAACACCAGGAAATGGAAGAGGACAGTGACAAGGATGCAAAGCCCGCAAGCTCTGACAGCACTGAGGAAACGACGGTGAAGGATTCGGCTTTGGATCTGAAGTTTACAGCATTGCACTTTGGGAAAGTGAAAGGAGAGCCATACGGCTGTGTTCAAtTTAAAGAAGATGGCATTACAATACCATTGAAAGACCCTCTAGGCGAGAGCCTGTCTCTGACCGTGGTGCAGTCTGAGCTGAAGAGATACGGCGTATGGGAGTGCACAGCGTTGACAGACCACAGTGAAGCCAACACGCTCCTCTTGTTGTGGGTCTCTCCAGCTCAAGCACAGCTTATCCAGAAGGAGTTATCTCCAGTTTATCCAGTAGAAGAGTCAAcCAAGGCCAGTGAGTTTGTGCTGCTGGAGCTGTGCGAGGCGGCCGACGGACAGCTGTGCGAGCTCCTGGCCAGACTGATGGGTGAGATGGCACAGAGGAATGGAGAGGCCGGGCTGCAGGAGCCTCTGTCCCGGGCCGAGGGTTTCTCCTTGCTCAGAAAGCACACATGGTAtccctgcctcctctctctgctTGGGCTGGATCAGGGCCAGAGCCCGGAGCCAGATGACAGCCAGTCCCCCCAGGAAGAGCAGGACCagccctctctcccttctccacAGGAGAACTCTAGTCTACCCATACCCCGCTACACCCTGTGTCATCGCAGAGTGAACAACTCCTTCTCCATCTCCATAGCCTTGAAGCCAAACAAGCCCTTGATCCCTCACCAGTACAGAGGTCCACCAACAAAGTTAATTCTGTTCCCTCCACCACCTACAAAAGGAGGAATTTCCGTCACCTCTGAGGATCTGGAGTGTCTAGAGAACGGGGAGTTTCTAAATGACGTCATTATTGACTTTTACCTCAAGTATTTACTGCTTGAGACGGCCCCCAAGAAGGTGGCTGAGCGTACGCACGTCTTTAGCAGCTTCTTCTACAAACAGCTGACCCGGAAAGATAATCCCAATGAGGAGGCCGCCAACATTTCGGCCCAGCATAGGAGACACCACAGAGTGAAGACCTGGACTCGGCACATAGACATCTTTACCAAGGATTACCTATTTGTGCCTGTCAATCAGGAGTCTCACTGGTACCTGGCTGTCATCTGCTTCCCCTGGCTGGAGGAGCCTCAGTCTGAGGAGTGGACCACACAGGCTGTCCCCAAGAGTGGGCCGCACAAGACCTGCCAGGGCAAGCCGGGGGGCCACACTACTGGAGACAAGGGGGGGCTGAACGGCTTCATGAAGACTGCCACTGCCAACCGCTGCGGCAACAGCCCAGACATCACAGGACTGCACACAGATGACCTGccaaagagagagagtttACCTTGCATTCTCATCATGGATTCTCTGAAGCTGTCTTCTCACGAACGCACAGTCAAACTCTTACGAGACTATCTGCAGGTGGAGTGGGAGGTGAGGAGGGGAACACCCAGGAAGTTCACGTCAGAACAGATGAGTGGTTCCCACTGTAGGGTCCCCTTACAGGACAACAGCAGTGACTGTGGCATCTACCTTCTCCAGTATGTGGAGAGCTTCCTTCAGGATCCTGTAGTCCATTTCGATTTGCCTCTCCGGCTGGAACGGTGGTTTCCTCGGCAGGAGGTGAAGAGGAAGCGGGACAAGATCAGAGACCTGGTATTGCAGCTGTACAGCCAGCAGAGAAGCTGCACCTAATGAAGCCCTGCAGCCAGGCGCACCCTGGCACAGACATTGCACACAGTTCCCCAGAGGATGATTCATAGATGCCAAACTGCCCACCAGTTGCAGAATGTGACAACGCTGTGGCCTCGCTTGCAAATAAAGCTGAAAGACTTTCCAGATACAAACAGATATAAtttatgttcattttcttttctttttttttttaacgtattGTTTTAAGTGGATGTAATTATTCAAAAATGactgtatgaatacatttttagatataATACACAGTGTTTTCTTGCTATTTGAGTCTTGAAATTCTAATTTGTTGGCATCTTGTTCAGCTTTGAGTCGAAGCATATTGAAACGAATGGACATGGTATTGCAGGATTTTTTGCAGGCTTTTTGCCAGTTTTGTTTTGGGCAGATTTTTTTTGGTCGGagaatattacatttgcagaaGAGCGTATCAATCCAGTACATCtgtcaaaaaataattttaaagatatGCACTATGTTCTTTTGAAATGGTCTCCAAATAGTTTCAGCATATTCTCATTAGAAATATCTTGGGTGCTTTAAATCAGATTTAATAGGTGATGTTTGGCTTCACGAGAAGTATGCAAAGTTACTGGTTGTTCTTTCATAAAAGcagtaaagaaaaaagtatttattcagACATGTTTGCCTTATTGTCCTCATGACACTGCCTGTTATTCCCACTTCTCAAAAGAAAGCATCAAACGGAGACGGCCTCACCAACAAGAAACTCAACTTCCGCCTCCTTCACAGCCTCAGACCTCCGTTACAAAAATTTCTAGATATGGACATAGAAAACCGAGAGAGATTTGCATACAGTatacaaaaaaagcacacattttaaaatgtacagcatgTAGAAGAAAAGAAGATTGGTATGTGTGCTCTACTCACATCCTGTTTACTAATTGAAGTAGCTAATCGGTAGAATGCTACCAAGGTATTGAACCCAGGGAGACCCCTGCCGATTATCCTGCTCCAGACTTCCTGTAGGTCCCTAGACAAGGTCAGCCGGTGGGCGGACTGTTGGGTTGTCTATTGGTCACTTAATTGCATCACTTTCCACAGAATTTGATTGTGTTGTTTGGAACTTGTTTGGTTGCCTGTTCTTTACGCTGATCGTGCTAGTGGCTTTCAGAGATGAAGATACAGACTTTGCAGTGGTTCCCTAGATGTATTGATATAGAGCCACTGAACCAACAATTTCTcctaatgtaataaaatgcagtGGGATCTGTAATCTTCAAAATACCCTATTAAGTAGATAGATGGTGGGTAATATCATCCTATCCTTTTGTTAGGCTTACAGAGGATAAGACCCTGTCTGCACATATCTGAAGTATCTTTAGTGTGTAAGCATTTGGGTGAACAGCTGTGACTGTCAATAAAGATGGGAGTCTGAGGGTTGGAACATATGGGGCACAGTGAGATTGCTAAGGATTGGAGAGAGATTTAAGATTTCCTTCCCCCTCCATCAATATAAAGGACCTCCATCAAAGTATTTGCATGTGAGACTAAATATAAAGTAATTACCAGGACCCCCCCGAGTTCTTAATGAGATTAAAGCCCAGGAGCTGTATAAGAATGCACAAGTCACCTCAAACCGACCGTGCACAACTGATCATTTTGAAAGATTGCTTCTGCCAAAAGGTTTCCAATGTGATGCTGAAAtctgtttcttttgtatttttccatgcaCATAAATGCttaggatttaaaaatatgagtcatgttttttaaatcctaaCCATTTTTGGGTTAGGTAGAGAAACATTTGCATACTACATTCttctaaattatgtttttattctatttctGAGCAGAGCTATACAAATGCTAAAAAGGacataaactaaaacaagataATGTCTAACAATACTGGGCCCCAGAGACTGCATAACTgagcaaacaaattaatttgtaaatctggtttaattaatttgttccatttgtgtttgttttactaatTCATGCACACAATGTATACAATGGGTCATTAAAtaccattcaaataaataaactcgaACTTCACACTTGGCATGTattcacagaaataaattatgcaGTTTTTTTAGATATATTCACAGAAG

Function

GO: NA

KEGG:

id description
K08596 SENP7; sentrin-specific protease 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87328 lncRNA downstream 112409 13087608 ~ 13096336 (-) False AMCG00014412
TU87308 lncRNA downstream 122400 13085363 ~ 13086345 (-) True G69896
TU87309 lncRNA downstream 122400 13085363 ~ 13086345 (-) False G69896
TU87311 lncRNA downstream 122400 13085363 ~ 13086345 (-) False G69896
TU87239 lncRNA downstream 238190 12970253 ~ 12970555 (-) True G69849
TU87397 lncRNA upstream 64396 13301924 ~ 13302379 (-) True G69950
TU87421 lncRNA upstream 66898 13304426 ~ 13375879 (-) True G69973
TU87498 lncRNA upstream 385587 13623115 ~ 13623381 (-) True G70034
TU87527 lncRNA upstream 457229 13694757 ~ 13696971 (-) True G70063
TU87569 lncRNA upstream 521698 13759226 ~ 13761420 (-) True G70091
AMCG00014411 mRNA downstream 4938 13175211 ~ 13203807 (-) True AMCG00014411
AMCG00014412 mRNA downstream 74994 13087662 ~ 13133751 (-) True AMCG00014412
AMCG00014398 mRNA downstream 226250 12907404 ~ 12982495 (-) True AMCG00014398
AMCG00014397 mRNA downstream 333209 12850007 ~ 12875536 (-) True AMCG00014397
AMCG00014396 mRNA downstream 427907 12778483 ~ 12780838 (-) True AMCG00014396
AMCG00014413 mRNA upstream 4298 13241826 ~ 13242652 (-) True AMCG00014413
AMCG00014410 mRNA upstream 14407 13251935 ~ 13260989 (-) True AMCG00014410
AMCG00014409 mRNA upstream 24851 13262379 ~ 13265549 (-) True AMCG00014409
AMCG00014437 mRNA upstream 140134 13377662 ~ 13408576 (-) True AMCG00014437
AMCG00014434 mRNA upstream 205742 13443270 ~ 13473171 (-) True AMCG00014434
TU87063 other downstream 1546252 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 2410598 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 3891578 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 4824521 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 5050155 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 15092211 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 16151762 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 19025639 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 19359934 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 19359934 32597462 ~ 32619149 (-) False G73127

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU419499 False 1101 lncRNA 0.46 9 NW_019172839.1 1707627 ~ 1712886 (-)