RNA id: AMCG00014415


Basic Information

Item Value
RNA id AMCG00014415
length 2135
RNA type mRNA
GC content 0.45
exon number 11
gene id AMCG00014415
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13323367 ~ 13331090 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAATATGCTCAATATATCGCAGTTACAGATTTAAAGTTGTTAAAGAATAGTAGTAGGTTAAAGGTTTGTATTGTTTGATAGCTATAAAAATGACTTGGACATAATTTCTACATTACCGCTGGAATAGTTCTTGATACTTTACAATTGCAATTAATCCGAAAGAAGGGGATTATTGCGACAATGCGGCAGGTTTACGGGAGAGTGGCAACAGGCGTTGAGGACTGGTCGTCAAAACGGTTTACGGCAGTGTGGCCATACGCCGGCAAactggaggaagaggaagatgaGGGAAGATGTCTGCGAGCCAAGCCGAGGCGGGAAACGACATGCCTGCGAAAAAGCAGAAACTGAGCAGCGATGAAAATAGCAATCCCGACCTTTCAGGGGATGAAAATGATGATGCTGTCAGTATAGAAAGTGGGACCAACACTGAGCGCCCTGACACCCCCACCAATACCCCCAATGCCCCTGGCAGGAAGAGCTGGGGCAAGGGCAAGTGGAAATCCAAGAAGTGTAAATATTCCTTTAAGTGCGTCAACAGTCTCAAAgTAACATTATATGAGTGTCATTCACAAGGAGAAATCCGTCTACTGCAGTCTTATGTAGATGCTGATGTATCCTTCCTATACTCCTTACAGAGCACTGGTTGTCTCCTGCTGCTCGCAGCATACATGGCGGATGAGAACTTCTACACCTGCGCGTGGACCTTCGACAGCAGCACCAGCCACCCCCTCCTGGCTGTGGCGGGGTCACGAGGCATCATTCGTGTCATCAATCACATCACTATGCAGTGCATCAAGCACTATGTGGGACATGGGAATGCAATCAATGAACTGAAGTTTCACCCTCGGGACCCGAACCTCCTGCTGTCCGTCAGTAAAGATCATGCCCTCCGGCTCTGGAACATCCAGACTGACACGCTGGTGGCTATATTTGGGGGAGTTGAGGGGCATCGTGATGAAGTCCTCAGTGCTgACTTCGATCTACTGGGTGAGAAGATCATGTCTTGTGGTATGGACCACTCCCTAAAGCTATGGAGGATAAACTCTGAGAGGATGCAGAAAGCTATTCGGGGGTCTTACGAGTACAACCCCAGTAAAACCAACAGGCCATTCGTCTCCCAGAAGATCCATTTCCCTGATTTCTCCACGCGAGACATTCACAGGAATTATGTTGACTGTGTGCGGTGGCTGGGAGATTTAATTTTGTCCAAGTCGTGTGAAAATGCCATTGTATGCTGGAAACCAGGGAAGATGGAAGACGACATTGACAGGATCAAACCAAATGAATCCAATGTGACCATCCTGGGACGCTTTGACTACAGCCAGTGTGACATCTGGTACATGCGATTCTCCATGGACTTTTGGCAGAAGATGCTGGCTCTGGGTAATCAGATCGGGAAGCTTTATGTATGGGACCTGGAAGTGGAGGACCCCCATAAAGCAAaATGCACCACCCTGACCCACCCTAAGTGCAACTCTGCCATCCGCCAGACCAGCTTTAGCCGTGACAGCAGTATCCTGATTGCCGTGTGCGACGACGCCTCTATCTGGCGCTGGGATCGGCAGCGCTGAGCGCCTGCACGGTTTCCTGGGCATCTGAGATGGCAGACCCCCTGAGCTTCAATGGCCTCGCCTTGTGGAAGTGTCAGGGTCCGAAGCCCACAGCCGGAGAGCTCTGCTGTCTTTTATATCCCTGTTGTccttttatttgctttttgtttttgatcctTGTTGCTTATaataaatttatttttctaaagtctgttttttattcatctaaaataaatatagcataTATCTatccatatgtatgtatatctatatatataattggggTTGGGGCAAAAAACTGCAAAGGGAATACTCATTTTAACCCTATTTATCGAAAtcaaaaaatgtttacatttttcaggggtttgttttggtggtgtttgctttgaaatgagGAGGAACTCATTGAAAttatcaaagaaaatataacctTTATATGGAAGATTGTACCTGAACATGTGGTCTAGCATAACCTCATACTCCATACAAAAAGTTTTTTGAATAAACATGGACATTTATACATCAACAAATAGCTAATTTGAAGTCGGTTGTTTTAACTATATAAATTGTTTTAGTCAGTGT

Function

GO: NA

KEGG:

id description
K11462 EED; polycomb protein EED

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87357 lncRNA upstream 71635 13246309 ~ 13251732 (+) True AMCG00014407
TU87358 lncRNA upstream 71635 13246309 ~ 13251732 (+) False AMCG00014407
TU87223 lncRNA upstream 340933 12980259 ~ 12982434 (+) True G69833
TU87160 lncRNA upstream 723054 12600104 ~ 12600313 (+) True G69778
TU87118 lncRNA upstream 1539284 11783865 ~ 11784083 (+) True G69739
TU87406 lncRNA downstream 3124 13334214 ~ 13335185 (+) True G69959
TU87408 lncRNA downstream 21243 13352333 ~ 13379593 (+) False G69961
TU87409 lncRNA downstream 46444 13377534 ~ 13380404 (+) True G69961
TU87516 lncRNA downstream 351953 13683043 ~ 13684492 (+) False AMCG00014423
TU87518 lncRNA downstream 363725 13694815 ~ 13696871 (+) True G70054
AMCG00014416 mRNA upstream 21494 13291329 ~ 13301873 (+) True AMCG00014416
AMCG00014417 mRNA upstream 39073 13276573 ~ 13284294 (+) True AMCG00014417
AMCG00014414 mRNA upstream 49064 13266017 ~ 13274303 (+) True AMCG00014414
AMCG00014407 mRNA upstream 73087 13246350 ~ 13250280 (+) False AMCG00014407
AMCG00014405 mRNA upstream 77733 13240840 ~ 13245634 (+) True AMCG00014405
AMCG00014419 mRNA downstream 9097 13340187 ~ 13360020 (+) True AMCG00014419
AMCG00014418 mRNA downstream 30658 13361748 ~ 13371376 (+) True AMCG00014418
AMCG00014420 mRNA downstream 119008 13450098 ~ 13451219 (+) True AMCG00014420
AMCG00014422 mRNA downstream 259830 13590920 ~ 13615018 (+) True AMCG00014422
AMCG00014421 mRNA downstream 299577 13630667 ~ 13650074 (+) True AMCG00014421
TU86705 other upstream 3314719 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 5906773 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 5973900 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 8671403 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 1005768 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 2344541 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 2344541 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 2798435 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 3134591 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile