RNA id: AMCG00014416


Basic Information

Item Value
RNA id AMCG00014416
length 3876
RNA type mRNA
GC content 0.46
exon number 12
gene id AMCG00014416
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13291329 ~ 13301873 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATAGTGGACCGACTTTCCGAAGATAGTATGGGCGGTATGGAGCAGGACCCCGGGCTGACGCCGAGCCCCATGAACCTGGGTTATTTCTTTGGGCAGTCCCCCGAGGCCAgcgagccctgttcctccccAGGGTCCCAGCTGTCTCCGCGCTCGCCCGGCTCCGACTGCGAGGCTTCGGGCGGCGGCGGGCCCTGCAGCCACGGCAGCGGTAAAGCCAGGCGCAGACGAGAGTCACTGATGGGCGGCGGGCGGCAGCAGGCCCGGTGTTTCCAGGGGGTGCGTGTGAAGAACTCGGTGAAGGAGCTGCTCATGCAGAAGCGCAACGGCCTGGTGCCCCCCGGCGCCGCGCACGACGGCACGGTGCAGATAAACTCAGAAGGACCTGAGGAATTTACAGAGCTGAAATCCATACTGCGAGAGGGAAAGAGACATGCTGCCCCCGACTGCCTACTTGACACTTTGTGTTACAAAAAACCTGCCACATTCCAAAACAATCTCCTGacACCTCCTCAGACACCCAGCTCCAATGATAATATGGAGTCTGGCCCAAAGGAGGACCCAAGTTTGGATGCCAACTCCAATATCTTGGACATTTTCCAGATGGTAAGGGATGGTAGTGGTAGCCCCCTTTCCCTGATGACCGTGCAAGTGAACTGGGAGAGTCCCTCCCAGGACCAACAAAGGGACCTCTATCACACAGTCCTGCCACAGGAAAGTTGTGGGCCGGTGCAACTCCCGTTCAGCAGCCTGCCACAAACCAGTAATCTAGCCCACAATGCTCCCGTCCAAAATGTAAACCTGCCTCAGGATCCAGAGCTTCCACAATACCCTTCTTCCGAGATGTGCTCCATCAGCAGTCATTCACAGTGCTATCTGCCTCCCTTGCCCCAGCTTCAGGCCCCCTTCTACATGCCCAACCAAGTGGCCAGTCCTGAGGCTAAGCAGACCTGTGACAATCCCACCAGATTTTCCTTCTTGCCCTTCCCACCTCTCAAGCCACAAGCCTCATCTGCCCAAAGGCCTCCCCTGCTGCCGCAAGCCATTCAGGGCAGTGGTGGCATGTCCTTCTTTCAGTGGCAGATCgagcaggaggagaggaggcTGGCCAGCCTGAGCCAGGATCGCTTCGTGGCCCGAGACAGTGATGGTGACACGTTTCTCCATATTGCTGTTGCCCAGGGAAGGCGTGCGTTGTCCTATGTGCTTGCCAGGAAAATGGCTGCCATTAACATGTTGGATGTCAAGGAGCATAATGGCCAGAGTGCACTACAGGTTAGTGTGGCAGCCAACCAGCACTTAATTGTGCAAGACCTGCTGAACCTGGGGGCACAGATAAACACGGCTGACTGCTGGGGCCGCACACCACTACACGTCTGCGCAGAGAAGGGCTATTCTTTGACACTAAAGGCTATTCAAAGAGCAGTGCAGGCAAATGGGAAGCACCTTGACCTGGAGGCCATAAACTTTGATGGCATGACTGCCCTCCACACTGCAGTTCTGTCCCACAATGCTGTGGTGCAAGAGCTGCACCGGGCCCAGCAGCCCCGCTCTCCCCATGTCCAGGACCTGCTGCAGAAGAGGAAGCTGCTGGGGGAGTGTGTGAGCACCCTGCTGCACATGGGAGCCTCCTTCAAGGCAAAGgACCGCAAGAGTGGGCATACAGTGCTGCACATGGCCGCAGAGGAAGCCAATGTCGAACTTTTGCGCCTCTTCCTGGACCAACCCGATTCCCTGTCCGTCGTCAATGACAAGACGTACAACGGGAACACTGCCCTACACATTGCCAGTGCCTTACAGAACCGCATGGCACAGGTGGACGCGGTGAGGCTGCTGATGAGGAAGGGTGGGGACCCCAGTGCCAAGAACCTGGAGAACGAGCAGCCCGCCCAGCTTACGCCTGAGGGGCCGGTGGGGGAGCAGGTCCGACGCATCCTGAAGGGAAAAGGAGCTCTTCAACGGGCCTGTCCTTTCTAGACCCTGTGCCACTTTTTTGATAACCACTGTCAGTTAGGCAGTCCATGTTTTGTTGTAAATAATCATTTGTCAGTTAGATAAATGTGAGTTGTTTCCATGAAACAAACTAAGAATTGTTCACTACTGTGTAGTGGGTGATACCAGAAGACAAAGTTTCTCAACAAGCCACAACATACAGCTCAACTCATCCCATAGCAAGCTGgaacatatacattttcaggATTTAATGTGCCTAAACGTGTGCAAGAGTCAATAAAAACAAGGTTGCTGAGGCCAAACAAATTTTCCATCATATCAGATTGTCTGATACATATTTCCACCCTTGAATTGTAATGTGTGACCTTTGAGTATACAAACCTGATGCTTATTCATCCAAACACAGTACATTGTAGCACTACAGAACTTATTTGTAGGTGAAGAAATTCACTCAAAGTTCAATAGAAAAGATAATATGTGATTCATGTTGTAGGAATAACCTCCGTTTTGTTAAACCAGACCTTTAGTCAATGGATAAGATATTCCGTTCAGATACTGTTCATTTTCCAACACAACCATTTTAGCAATCTCTCAAGCAGGTAAATGTCTTTATTGTTGGACTTGTTATCAGTACACTTTGTCTTTCGCAGGGcaagatatgtatatattcaaaatggAACCTTAACTAATGAGAcctcttgttgtttgttttaaaaatagttcaaATAGTTATTCATTAACTTTTATTAGGGTGATAAAATATTCCTAATACCCATGATGTAAGGTTCTGTGTTGAAGACATTCAATATGTAACCAGAGAAGGAAAAGTGTGGTAAATCTACTgtaatttattatcattattatttttatatatataacgtaAATTAAGCAGAATATCCATAAAAATGGGTTTGGAGTATTATTATGACCCTAGTAATGGTAAAATTAGTTTCACAACATTGATAAAAACTAACTTACTTTTGATAAATTTTCTCTTACTACTCAGAGATTCTATTAGACATATTAGGGCAGatatgttttgtacatttaatgtattttgattataGCCAGTGATGAGTGTCAATAATGTGTGAAATTGTGACATAACTTCTGTTTGAAATAAGAATGCTAATCAGTCATGTTGAAAGCTATACGCAGTGTCATGAAATAGTGAGAGAGTTCATGGATCCATTCTTTTACTAATTTTACTGTGTACGTTTTGATGATGATTGTCCTTTAAAGTTAAAGAGCATTTGAAGTACAGTTATGGAAATGTTGAAAATCACGAGCTGCTTGAGCATGGTAAAGATGCCTAGCAGAaaggtgttgtgtttttttaagtttattccTCTGTAACTTTCAAACtgattgtaatatatttttggagCTATTGTTAATTTTTTGATTTGTATCAACATTTAAGAATAAGTATGTATTGAACAGATGGATTACAGGGAAGGCACTTGGGTAAAgatgaatgtaaatataatgtactAAAtgctggagggggagggggttacgCATACATCCTGTTTGTAGTATTTGCTCTAATCATACCCCTTCCTCCAGTGTGGGGTGTTAATTGAGACTGGGATATTATTACAGCAGATACGATAGTTGAATGAAGGAGGACGTCATAGTGTAACATTTATAAtggtttattataaatgtagtcAAGCAGGAGCACCAACTGAACATAGGTGCACAgattgctttttgaaaatcaattaCATATACAAAGTTTGTCCTGGAGACAAAACATGATTTACAAAAAGCAGGATTTGCATGAAACTACAGGTGTGGTTTCAACACAGTAGGTTGCTCTAAATGTTTGACTAAGTATGTCTTGTAGACAATGTCTCTTTAATCAGTTTATACAGCTTTTATCATGACTAGGTGTGGAATTTAATGGTGTgatttgtg

Function

GO: NA

KEGG:

id description
K14242 NFKBIZ; NF-kappa-B inhibitor zeta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87357 lncRNA upstream 39597 13246309 ~ 13251732 (+) True AMCG00014407
TU87358 lncRNA upstream 39597 13246309 ~ 13251732 (+) False AMCG00014407
TU87223 lncRNA upstream 308895 12980259 ~ 12982434 (+) True G69833
TU87160 lncRNA upstream 691016 12600104 ~ 12600313 (+) True G69778
TU87118 lncRNA upstream 1507246 11783865 ~ 11784083 (+) True G69739
TU87406 lncRNA downstream 32341 13334214 ~ 13335185 (+) True G69959
TU87408 lncRNA downstream 50460 13352333 ~ 13379593 (+) False G69961
TU87409 lncRNA downstream 75661 13377534 ~ 13380404 (+) True G69961
TU87516 lncRNA downstream 381170 13683043 ~ 13684492 (+) False AMCG00014423
TU87518 lncRNA downstream 392942 13694815 ~ 13696871 (+) True G70054
AMCG00014417 mRNA upstream 7035 13276573 ~ 13284294 (+) True AMCG00014417
AMCG00014414 mRNA upstream 17026 13266017 ~ 13274303 (+) True AMCG00014414
AMCG00014407 mRNA upstream 41049 13246350 ~ 13250280 (+) False AMCG00014407
AMCG00014405 mRNA upstream 45695 13240840 ~ 13245634 (+) True AMCG00014405
AMCG00014406 mRNA upstream 51219 13239073 ~ 13240110 (+) True AMCG00014406
AMCG00014415 mRNA downstream 21494 13323367 ~ 13331090 (+) True AMCG00014415
AMCG00014419 mRNA downstream 38314 13340187 ~ 13360020 (+) True AMCG00014419
AMCG00014418 mRNA downstream 59875 13361748 ~ 13371376 (+) True AMCG00014418
AMCG00014420 mRNA downstream 148225 13450098 ~ 13451219 (+) True AMCG00014420
AMCG00014422 mRNA downstream 289047 13590920 ~ 13615018 (+) True AMCG00014422
TU86705 other upstream 3282681 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 5874735 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 5941862 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 8639365 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 1034985 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 2373758 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 2373758 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 2827652 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 3163808 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile