RNA id: AMCG00014417


Basic Information

Item Value
RNA id AMCG00014417
length 3288
RNA type mRNA
GC content 0.46
exon number 6
gene id AMCG00014417
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13276573 ~ 13284294 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gattattttaaagacCCACCCCTTTGCTTTTCAGCCATTGGAGGACGGGAAGCTCTTCACTGCACTGATCTGTGCGACTGGGGCTGAGAGGCGGCTGCTTCTCACTCGAGCGCATGATTGAATGGGTCTGTATCTACATGTaagtattatttcagttattatttattcagatcAAGCACTGCACCTTTGCCTCCGTTTGTTTTGATCGATTCCAGCGAATTCGGATCAGCTGCTGATCCAAACCAGCTCGGCTCAGCCACAGTGTCTGCACAGGCCGGCTCTGCTTCATGATACGATGGTGGTGATCCTGGTGGCCAATCTCAAGATAACGGTCTTTATTGATCTTTTAGGTGACGATCTGGTAATATAATCGACATGCATGAAATGAAGTGAGCCTGGAAATGTGGTTGTTAGTGTTGATGGGTTGACTACTGTGTTGCCTCGGCTTGAGGAATGTCGGTGAAGTACCCAGATCAATtagatgtgtgttttgcaaCGAGTTTATGCAGAACTAGGGCTTGCATTTGAATAAactatgaatatttaataatatatatttaaaacgaTCTTTCGTTTAAGGCATATACGGAATGATTAATTTAGACATGGCGTGTATGTATCTCCGGAAATCGGCAGTAATGTCGGATATATCTGGGTATATCTGACGTTTAAGGGATGGAGGTGATAGTACGTACACAGTAGTACGTTCAATTGCCACAcgaatgtatgcatgtgtgtgtgcttcaaaatacgtatatatttatataatatcatGCATACTGTAGCGCTGATGGTCACATGAGAGTTACAGGCCTTGAAATGCTGCATGTGTTTTGGTTGCACATATCTgtattattcatgtatgtatgtatgtatttattgtattagcagACTGTGCATATAAGGACTTCAGCCCATGTTGTTCAGCATTCTAGCACATCATTTGGTTTCGAAATCATGGATTTACAAGATCGAAATATAATGCTAATGCACAAggttttacagtttacattttccTGGTCTCCAACTACCCATCACATTAATTTActaattcaaattgttttttacCGTTATAACACATTACAATCTGTCACACAAAATATCTGATGTTTTTTTGGTACGATCATTCCTTATTGTGGTTACATCTGTTAAATCCTGAtgaaatgattattattaagctTTAAGGTATGATGTGTGCATTGTCTGTGTACTTTGCCATGCTGGTAATGGTAACTGCAGTTTCTGGTAGATACATGATAGCAAAAAGGAACAACTTAGTAACTAACTATTTTGAGTATGTATTAGCAGAAGCAAACTTTACTATTATTTGCAATTCCCAACCCAGGCCGTTACcgctatacaaatatattattctgcACATACTCCAAATGCAAATCTAATCAAGACCTCTATGCAGGGTGGGGTTACTCTAATCAGATCTCACTATATACTAATTACATGTGTGGTGAAAAATCACtaatcatttatataatttaataatcgGTTGCCAGTTGCTTCTGTATTACTGCTTGCTCCAATATAAACGAGAGGTCTGCCCCCTCCCTTTGTGATATGCCCCTTCAGAGGTGGGATAACAGTTGCTTGTAACCTGGAATTATTAAGACTTTGGAGATCAGCATTCGATGCATGCTTGAATAGCAAACCAGCCTTCTAAACACGAGCAATGTGTCCTGGATCATTTTGAGAGACATTATCtccttttcaattttatttagttttttccagtgGATGAGCATTTTCAAACTCTGCTGACAGTGGCAATGACAACACAGCGACAGCTGTCAGCAGGCCTGTGATGCCAATGGAAAATGGCAGAGGAGGCCAAATCAGGGCACCACAATGTGGAGTAATCTGTCAAAATTTACCCCGCTTTTTGTGTTCTTGGCACTTTCTGGTCTCATCTTCCTCTTGAGAAACATCAACACTTTAGAGAAATTTAACTGCAAAACTGCCTCAGCACTTTATCACTTCCAGAACTCCATCAACATAGCCTTCAGGCCTCTGGGCCCGGTGGACAGTAACCACTCGTATTGTGGCTACCCAGCCCTGGACCTGACTCCAGAAGAGGTGGTTGAGGAGCAGTACCTGTTGGATTTCGTTGCTTGGCCGGAAACCTCACTGCAGGGCGTGTCGTTCCGCCAGAGCTCTGACCCGGCACACAGCTTCTTCGTCATCCTTGGCTCCGATGGGGACTTTAGAGTGGGTGAGCAGCTTGAGGTCCTGGTCCACATGCATGACTTCCAGGGGCAGCCCAAGCAGCACGGGGGCGACTTCCTGCTGGCCCGAGTGCACTCTCCGGAGCTGAAGGCAGGGTCGGCTGGTAAGGTGGTGGACCACCAGAATGGCTTCTACTCGGTGTTCTTTGCCTTGCTGTGGCCGGGGGAGGTGAGAGTGTCCGTGACCCTGGTCCACTCCAGTGAGGCCGTGCAGGTGCTGAAGAGGCTGCGGGAGGAGCACCCCGACCGGGTCTATTTCAAGAGCCTCTTCCGCTCCGGCTACTTCACCGAGACAACCCAGTGTAATCTGTGCCTGTCTGCCCACGAGCCCCTCTGCAATTTCACAGACCCCCACACCGGAGAGCCCTGGTTCTGTTACAAACCCAAACTGCTGAGCTGCGACACCCGTGTTGACCATGCCAAGGGAGGCTACCAGAAGCGTCTGATCAGCAGCAGAGAGGGTCTTCTTTTTCAGAGtgaTATTAACATCAAGATTCCTTTATTGGCATCTGGCACAGACCGTGTGACAGTGAAACCCCAAGAAAGTAAAGATAAATGGGAGCTGGAGAGGAATGCCAACTCAGATGTTATCAAATTCACTCCCTCTGGGTTCTATTACCAAGATGTTTGGAAGTCAACGGCAAGGCTGGTGGTGCGGCAGTTCAATGACACGTCAATCACGCAGTGTCTGCATGGGAAGGTGGTGTACCTGTTTGGAGACTCCACGGTGCGCCAGTGGTTTGAATACCTGAATGATGTGGTTCCAGACCTGAAGGAGTTCCACCTAGGTAGTCCAAAGAAAGTGGGGCCCTTCCTGGCAGTGGACAGTGTGCATAACATCATGTTGAACCTGTACAACAGCGACTGGTTCTCCCTACAGCTGGACTCCGTGCTTCGCAGCATGTTCCGCGGCCTGGATGTGGTGCTGGTGGATGCCTGGGAGATGACCCTGGCACACTACCTCCCCCATGCCCTCCACCCACCCCCCATCATCATCAAGAACCAGATCGACGTCTTCCTCTCTCATATCTGTCACGACCGCAGGAGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87357 lncRNA upstream 24841 13246309 ~ 13251732 (+) True AMCG00014407
TU87358 lncRNA upstream 24841 13246309 ~ 13251732 (+) False AMCG00014407
TU87223 lncRNA upstream 294139 12980259 ~ 12982434 (+) True G69833
TU87160 lncRNA upstream 676260 12600104 ~ 12600313 (+) True G69778
TU87118 lncRNA upstream 1492490 11783865 ~ 11784083 (+) True G69739
TU87406 lncRNA downstream 49920 13334214 ~ 13335185 (+) True G69959
TU87408 lncRNA downstream 68039 13352333 ~ 13379593 (+) False G69961
TU87409 lncRNA downstream 93240 13377534 ~ 13380404 (+) True G69961
TU87516 lncRNA downstream 398749 13683043 ~ 13684492 (+) False AMCG00014423
TU87518 lncRNA downstream 410521 13694815 ~ 13696871 (+) True G70054
AMCG00014414 mRNA upstream 2270 13266017 ~ 13274303 (+) True AMCG00014414
AMCG00014407 mRNA upstream 26293 13246350 ~ 13250280 (+) False AMCG00014407
AMCG00014405 mRNA upstream 30939 13240840 ~ 13245634 (+) True AMCG00014405
AMCG00014406 mRNA upstream 36463 13239073 ~ 13240110 (+) True AMCG00014406
AMCG00014401 mRNA upstream 210596 13057865 ~ 13065977 (+) True AMCG00014401
AMCG00014416 mRNA downstream 7035 13291329 ~ 13301873 (+) True AMCG00014416
AMCG00014415 mRNA downstream 39073 13323367 ~ 13331090 (+) True AMCG00014415
AMCG00014419 mRNA downstream 55893 13340187 ~ 13360020 (+) True AMCG00014419
AMCG00014418 mRNA downstream 77454 13361748 ~ 13371376 (+) True AMCG00014418
AMCG00014420 mRNA downstream 165804 13450098 ~ 13451219 (+) True AMCG00014420
TU86705 other upstream 3267925 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 5859979 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 5927106 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 8624609 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 1052564 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 2391337 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 2391337 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 2845231 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 3181387 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile